Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g3722 ATGCTACCTAAAAGCCGTTCACCCCCTTCAATCTCTCTTCCAATTCCAGATACCCATTTTCCCCCTTCTTCTCCTATTCAATTTTCATCACAAAAAAAATCTCCTTTTTTTCACCCTTTTGATGAATTCAATGAGTTAAGAACTTTGAATTCTGTCAAAGAAATGCATGCCCAGATGGTTAAAAACCCTAAAAATGTTAACTTTACTACAATGGATGGAACTATCATGAGATACTATTTGGAGTTTGGTGATTTTGTATCAGCAATTAAAGTGTTCTTTGAGGGTTTTGCAAGGAATTATCTTCTCTGGAATTCTTTTATGAAAGAATTTGAAAGTTTTGGAGGTGACCCATTTGAGATTCTGGTGGTTTTCAGTGAATTGCATAGTAAAGGTGTGGAATTCGATAGTAAAGCTTTCAACTTTGTTCTGAAAATTTGTTTGGCTTTAAGGGAATTATGTGTTGGTCTGGAAATTCATGCTTGTTTGATCAAGAAAGGGTTTCATGATGATATACACTTGAATTGTGCATTGATCAATTTCTATGAGAAATGTTGGAGTATAGATAAGGCAAATCAAGTATTTCACGAGACTCCATATCAAGAAGATTTTTTGTGGAATACAATAGTTATGGCGAATTTGAGGAGTGAAAAATGGAAGAATGCCTTAGAATTGTTTGGTAACATGCAGAGAGTTTCTGCAAAAGCGACTCCTGGCATCATTGCCAAGATGTTGCAAGCATGTGGAAAATTAAGAGCTCTCAATGAAGGAAAACAGCTTCATGGGTATGCTTTAAGATTTGGACTAGTTTCAAATACTGTAGTTTGCAATTCCATTATTAGTATGTACTCTAAAAACAAAAGATTCAAACTAGCTAGGGCAGTTTTTGATTCGATGGGGGTTCGTAATCGTGACTTATGGTCTTGGAACTCAATAATTTCGAGTTATATGGACGATGGCTGTTTGAGTGATGCATTCAATATTATCGTCGAAGAAATGAAGTGTTCTGGTATTAAACTTGACATTATAACTTGGAATTCGGTTTTGTCGGGCTATGTTCTTCAGGGGTCATTTGAAATGGTTCTCACTAGTTTTCGGAGCTTGTGTAATGCAGGCTTCGAGCCAGATTCATGCTCGGTAACTAGTGCTCTAAAAGCAATTATTGAATTAGGTTTCTTTAAATTAGGGAAAGAAATCCATGGTTACATAATGAGAAGTAATCTTAACTGTGATGTCTATGTTTGTACTGCATTGGTGGATATGTATGTTAAGAATGATTGCTTAGAAAAGGCTCATGCAGTGTTCCGGCACGCAAAGAACAAAAATGTCTGCACCTGGAATTCTCTGATATCAGGTTACTCCTTCAAAGGACTGTTTGATGACACCGAAAAACTATTGAATCAGATGGAGGAGGAAGGGGTAAAACCTGATTTGGTGACATGGAATTGTTTGGTGTCAGGTTATTCAATGCGAGGCCGGATCGAGGAAGCTTTGGCAGTGATGAATCAGATAAAAAGTTCCGGAATTACTCCTAATGTGGTGTCTTGGACTGCTTTGATATCAGGATGTTCTCAAAACGGGAAATACACCGATGCCCTACAGGTTTTCAGCCAAATGCAAGCTGAAAATGTAAAACCCAACTCGACAACGATTTGCAGCTTACTTCTTGCATGTACAGACCCGTCTCTGTTGAATAAAGGCGAAGAGATTCACTGCTTTAGTATGAAACTTGGGATCGTAGACGATATATACATTTCAACAGCACTCATTGATATGTATAGTAAAGCAGGAAAGTTAGAAGTAGCACATAATATTTTCAGCAAAATTCAGGAGAAAACGCTTCCATGTTGGAATTGCATGATGATGGGATATGCTATACATGGCCATGGTGAAGAGGTAATGATTCTCTATGATGAGATGCGCGAAAAATGCATTAGACCTGATGCGATAACGTTAACAGCTCTTCTATCTGGTTGCAAGAATTCAGGTTTAGTCAATGAAGGATGGAGATACTTTGACAGTATGCAAGAAGATTATAATATTATTCCAACGATTGAGCACTACTGTTGCATGGTAGACCTACTTGGAAAAGCTGGGTTTCTCGATGAAGCTTTGGATTTCATCAAAACTATGCCGATAAAGCCGGATGCGAGTATTTGGGGTGCTCTTCTTGCATCGTGCAGAATTCACAAAAACATTAAGTTAGCAGAGATTGCAGCTGAGAAGCTTTTCAAGATGGAACCGAATAATTCTGCTAACTATGTGTTGATGATGAATTTATATTCGAGTTTATACCAATGGGATGACGTGGAGCGTCTTAAGCGCTCGATGATTACTTTGGGAATGAAAAGTCCACCTGTTTGGACCTGGACACAAGTTAATCAGAGTATTCACGTGTTTTCGACAGATGGAAGATCACATCCAGAAGAAGGGGAAATATATTTTGAGCTATATCAATTAATTTCCGAGATACAAAATCTTGGTTATGTGGCTGATCTCAATTGTGTATGTCAGAACATTGATGACAATGAGAAAGAGAAGATTCTTCTGAGTCACACTGAGAAGTTGGCAATGGTATATGGAGTGATGAAAATGAAAGGTGAATCACCAATTAGGGTTGTTAAGAACACAAGAATTTGTTGCGACTGTCATACAGTTGCAAAGTACATTTCTTTGGCTCGAAATTGCGAGATTTTACTTAGAGATGCTGGCCGTTTTCACCATTTTAAAGATGGAAAATGTGCTTGTAATGATTGTTGTCATGTCGCAACGGTAAGGTTGATGCCTTGTGACAGAAGGTTTATGAGTTCCAAATCTGAAAGCGACCTCTTCGCATATGGAATCAAGCCACGTGAAAAGGTTGGAACAGATACATTACTTGGGAGTCAACATCATCACCATCAGGATACCATGCAAGTTAATGAAATCCTTTTTTCATCCTTACATTGTAGAAAACAACCACATTCCTCAACCTAA 2973 0.3794 MLPKSRSPPSISLPIPDTHFPPSSPIQFSSQKKSPFFHPFDEFNELRTLNSVKEMHAQMVKNPKNVNFTTMDGTIMRYYLEFGDFVSAIKVFFEGFARNYLLWNSFMKEFESFGGDPFEILVVFSELHSKGVEFDSKAFNFVLKICLALRELCVGLEIHACLIKKGFHDDIHLNCALINFYEKCWSIDKANQVFHETPYQEDFLWNTIVMANLRSEKWKNALELFGNMQRVSAKATPGIIAKMLQACGKLRALNEGKQLHGYALRFGLVSNTVVCNSIISMYSKNKRFKLARAVFDSMGVRNRDLWSWNSIISSYMDDGCLSDAFNIIVEEMKCSGIKLDIITWNSVLSGYVLQGSFEMVLTSFRSLCNAGFEPDSCSVTSALKAIIELGFFKLGKEIHGYIMRSNLNCDVYVCTALVDMYVKNDCLEKAHAVFRHAKNKNVCTWNSLISGYSFKGLFDDTEKLLNQMEEEGVKPDLVTWNCLVSGYSMRGRIEEALAVMNQIKSSGITPNVVSWTALISGCSQNGKYTDALQVFSQMQAENVKPNSTTICSLLLACTDPSLLNKGEEIHCFSMKLGIVDDIYISTALIDMYSKAGKLEVAHNIFSKIQEKTLPCWNCMMMGYAIHGHGEEVMILYDEMREKCIRPDAITLTALLSGCKNSGLVNEGWRYFDSMQEDYNIIPTIEHYCCMVDLLGKAGFLDEALDFIKTMPIKPDASIWGALLASCRIHKNIKLAEIAAEKLFKMEPNNSANYVLMMNLYSSLYQWDDVERLKRSMITLGMKSPPVWTWTQVNQSIHVFSTDGRSHPEEGEIYFELYQLISEIQNLGYVADLNCVCQNIDDNEKEKILLSHTEKLAMVYGVMKMKGESPIRVVKNTRICCDCHTVAKYISLARNCEILLRDAGRFHHFKDGKCACNDCCHVATVRLMPCDRRFMSSKSESDLFAYGIKPREKVGTDTLLGSQHHHHQDTMQVNEILFSSLHCRKQPHSST* 991
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g3722 990 PANTHER OS05G0586900 PROTEIN 120 196 - -
Psa4g3722 990 PANTHER OS05G0586900 PROTEIN 199 907 - -
Psa4g3722 990 Pfam Pentatricopeptide repeat domain 328 385 IPR002885 -
Psa4g3722 990 Gene3D Tetratricopeptide repeat domain 205 369 IPR011990 GO:0005515
Psa4g3722 990 Gene3D Tetratricopeptide repeat domain 664 810 IPR011990 GO:0005515
Psa4g3722 990 Gene3D Tetratricopeptide repeat domain 37 198 IPR011990 GO:0005515
Psa4g3722 990 Gene3D Tetratricopeptide repeat domain 394 569 IPR011990 GO:0005515
Psa4g3722 990 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 304 339 IPR002885 -
Psa4g3722 990 Pfam PPR repeat family 615 658 IPR002885 -
Psa4g3722 990 Pfam PPR repeat family 510 557 IPR002885 -
Psa4g3722 990 Pfam PPR repeat family 440 479 IPR002885 -
Psa4g3722 990 TIGRFAM PPR: pentatricopeptide repeat domain 273 298 IPR002885 -
Psa4g3722 990 TIGRFAM PPR: pentatricopeptide repeat domain 478 512 IPR002885 -
Psa4g3722 990 TIGRFAM PPR: pentatricopeptide repeat domain 307 340 IPR002885 -
Psa4g3722 990 TIGRFAM PPR: pentatricopeptide repeat domain 649 683 IPR002885 -
Psa4g3722 990 TIGRFAM PPR: pentatricopeptide repeat domain 513 546 IPR002885 -
Psa4g3722 990 TIGRFAM PPR: pentatricopeptide repeat domain 443 476 IPR002885 -
Psa4g3722 990 TIGRFAM PPR: pentatricopeptide repeat domain 342 376 IPR002885 -
Psa4g3722 990 TIGRFAM PPR: pentatricopeptide repeat domain 615 648 IPR002885 -
Psa4g3722 990 Pfam PPR repeat 204 230 IPR002885 -
Psa4g3722 990 Pfam PPR repeat 686 710 IPR002885 -
Psa4g3722 990 Pfam PPR repeat 586 611 IPR002885 -
Psa4g3722 990 Pfam PPR repeat 273 299 IPR002885 -
Psa4g3722 990 Gene3D Tetratricopeptide repeat domain 570 663 IPR011990 GO:0005515
Psa4g3722 990 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 647 677 IPR002885 -
Psa4g3722 990 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 120 196 - -
Psa4g3722 990 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 199 907 - -
Psa4g3722 990 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 476 510 IPR002885 -
Psa4g3722 990 Pfam DYW family of nucleic acid deaminases 827 917 IPR032867 GO:0008270
Psa4g3722 990 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 612 646 IPR002885 -
Psa4g3722 990 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 340 374 IPR002885 -
Psa4g3722 990 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 511 545 IPR002885 -
Psa4g3722 990 Pfam E motif 729 791 IPR046848 -
Psa4g3722 990 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 441 475 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g3722 Psa-Chr4 312586607 312590970 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g3722 135 917 Glycoside Hydrolase AT3G49170 29.928 1.62e-125 400
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g3722 - - mtr:MTR_8g027810 1549.26
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa4g3722 4 312586607 312590970 Psa4g3722 4 312586607 312590970 ECH