Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g3545 ATGGGAGAACCAACAGAAAGGTATGCAGTAGTGACTGGATCAAACAAAGGAATTGGATTTGAGATAGTGAAGCAGTTAGCTTCAGCTGGAATCAAAGTGGTGCTTACAGCAAGAGATGAACAAAGAGGTCTTCAAGCTTTGGAAACACTCAAAGCTTCTGGTTTATCTCATTCTGTTGTTTTTCATCAATTAGATGTCGCTGATGCTGCAAGTGTAGCTACTCTTGCAGATTTTGTCAAATCCCAATTCGGCAAACTTGATATTCTGGTTAACAATGCTGGGATTGGTGGAGTTGAAATTAAAGATAGTAATTTATTCAATTCAGCACTCATTACAAACGGGGCATTATCAGAAGATGAAAAGAAAAAGGCGGTGACTCAAACATACGAGTTAGCTGAAGAATGCTTGAAAATAAATTTTTATGGTACTAAAATAGCTACTGAATCACTTCTGCCACTGCTAAAGTTATCCGATTCGCCGAGAGTTCTGAATGTATCATCCACTCTAGGGAAGTTAGAGAGTATACCAAATGGATGCGCAAAAAGTATCTTCGGTGATGGTGATAATCTAACAGAAGAGAAAGTGGATAAAGTATTGAAGAAATTTCTGAGAGAATTCAAAGAAGGTTCATTAGATGAAGACAATGGCTGGCCTAAGACTTTGGGGGCATATATCATTTCTAAAGCTGCTATGAATGCTTATACAAGAATTCTTTCAAAGAATTCTCCTGCTTTATGCATCAATAGTGTTTGTCCTGGTTATGTCGTAACCGATATAACTGCCAATACCGGTTTGTTATCGGTCGAAGAAGGTGCTGCTAGTGTTGTGAGGCTAGCACTGCTTCCTAATGGTAGTCCGTCCGGCTTCTTCTTTTACCGGAGTGAAGTGTCTTCCTTTTGA 900 0.3911 MGEPTERYAVVTGSNKGIGFEIVKQLASAGIKVVLTARDEQRGLQALETLKASGLSHSVVFHQLDVADAASVATLADFVKSQFGKLDILVNNAGIGGVEIKDSNLFNSALITNGALSEDEKKKAVTQTYELAEECLKINFYGTKIATESLLPLLKLSDSPRVLNVSSTLGKLESIPNGCAKSIFGDGDNLTEEKVDKVLKKFLREFKEGSLDEDNGWPKTLGAYIISKAAMNAYTRILSKNSPALCINSVCPGYVVTDITANTGLLSVEEGAASVVRLALLPNGSPSGFFFYRSEVSSF* 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g3545 299 PRINTS Glucose/ribitol dehydrogenase family signature 8 25 IPR002347 -
Psa4g3545 299 PRINTS Glucose/ribitol dehydrogenase family signature 84 95 IPR002347 -
Psa4g3545 299 PRINTS Glucose/ribitol dehydrogenase family signature 224 243 IPR002347 -
Psa4g3545 299 PRINTS Glucose/ribitol dehydrogenase family signature 243 260 IPR002347 -
Psa4g3545 299 CDD carb_red_PTCR-like_SDR_c 7 299 IPR045313 GO:0016616
Psa4g3545 299 Gene3D - 3 299 - -
Psa4g3545 299 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 84 95 IPR002347 -
Psa4g3545 299 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 160 168 IPR002347 -
Psa4g3545 299 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 224 243 IPR002347 -
Psa4g3545 299 PANTHER SHORT-CHAIN DEHYDROGENASE/REDUCTASE 7 299 - -
Psa4g3545 299 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 7 285 IPR036291 -
Psa4g3545 299 PANTHER (+)-NEOMENTHOL DEHYDROGENASE 7 299 - -
Psa4g3545 299 Pfam short chain dehydrogenase 8 173 IPR002347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g3545 Psa-Chr4 298797292 298812650 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g3545 3 180 Acyl Lipid Metabolism Gene Families AT3G55290 31.183 3.33e-10 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g3545 K15095 - gmx:102663482 436.802
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa4g3545 4 298797292 298812650 Psa4g3545 4 298797292 298812650 ECH