Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g3530 ATGACCACGCCGACACCGGAAGCAGTCGCAACCTTCATGCGAATCACCGGAGCCACGGAGTTTGTCGCCGTTCAGAAATTAGAGGAATATGGAGGCAATCTAAACGAAGCTGTGAATGCGCACTTTATCGAAGGAAACAGGCTCATCCAGGAGCAAAATCCTGTTGCTACTACTGCAACCCCGCATTACTATTACTCTGAAGCAAATAATCAAAACAACCAAAACCGTGCCGGGTCACGTGGAATTTTGCCTCTGTTGAATGCTGCTAGAAGATTTAGACCTTCACTACTGCTTGACTCAAACTATAGGAGAGAACTTAGAGATCTATGTAATGGGTTGGGTACTACTACGATTTCGAGTAGTGCATCGCCTCGTGGTTCCCCTCAAGGAGAGGTGCTGGGAGTTCCCACAGGGATCAATAGTCCACATGTGTCACCTTATCAACCAGGATTGAGCCATGAAGATGCTTACAGGAATGGAAATTTATCGTCTCATAGTCAGGGATATTATGGACCAGATGATTATCAGAATACTTCAAATGTTCGTGATCAAGATGCAGAGGAAGCAATGATTCAAGCTGCAATAGAAGCCTCGAAGAAAGAGAGTAGAGAGCGCTCTTCATCGAATGCTTCTAACGATTTGTCCGACAATGGGCTTCCTCAAAGTAATTTTCATCTCGAAGATGATGATTTGGCTAATGTTATATCATTGTCCTTACAGACTGCAGAGCAAGAGGAAGCAATACGTGAGCTTCGTGTGAAACAACTTCGTGATTTATTAGCCGAGGGAGACAAGACCAACACCAGCAGAATCAGACCAGAGTGGGGTGGTATTTCTTCCGACGAGCTCAATGAAGCATTGCTGATTGAAACTGCATTTTTTAGTGAAATTCCCAATCACAATTCTCACAAATTTTCATCTTTGCCTGACCTGCAACATAGTTCAGAAAAACAAGCAGATCCCAAGAGGCAGTGTTCATCCAGTTCAGCATCTCAATTATTGTCCGAGACTCAATTGCTAAGAAAACAACAGGATGCTGACTATTTAGTGTCACTACTAGTTGATAGACAGAAAGAATTGAATTCTCTCAAAAAAGCTGAAACCTATTCTTCAAAGGAAGAAGAATCACACAAAAAGATGCTTGAAAGAACGGAATTGGAGAAAATACTTGATACAAAAAATATTATGCTTGCAAATGAACCGCCATTAGGTGATGGAAAAGCAATTACTATAGTTGTGCGAATGCCGGACGGTGGTCGTTGTGAACGACGCTTCTTCAAAACTGACAAGCTTCAGCTTCTTTTTGATTTCATAGACATTTATGGAGCAGTGAAGCCCGGCACGTATAGAGTTGTAAAATCGTATCCGCGGCGTGCATATAGTATTAATGATAGTTCAGCTACTTTGAATGAAGTAGGCCTTAACAACAAGAATGAGGCTTTGTTTCTGGAGTTGATTTAG 1461 0.4216 MTTPTPEAVATFMRITGATEFVAVQKLEEYGGNLNEAVNAHFIEGNRLIQEQNPVATTATPHYYYSEANNQNNQNRAGSRGILPLLNAARRFRPSLLLDSNYRRELRDLCNGLGTTTISSSASPRGSPQGEVLGVPTGINSPHVSPYQPGLSHEDAYRNGNLSSHSQGYYGPDDYQNTSNVRDQDAEEAMIQAAIEASKKESRERSSSNASNDLSDNGLPQSNFHLEDDDLANVISLSLQTAEQEEAIRELRVKQLRDLLAEGDKTNTSRIRPEWGGISSDELNEALLIETAFFSEIPNHNSHKFSSLPDLQHSSEKQADPKRQCSSSSASQLLSETQLLRKQQDADYLVSLLVDRQKELNSLKKAETYSSKEEESHKKMLERTELEKILDTKNIMLANEPPLGDGKAITIVVRMPDGGRCERRFFKTDKLQLLFDFIDIYGAVKPGTYRVVKSYPRRAYSINDSSATLNEVGLNNKNEALFLELI* 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g3530 486 Pfam UBX domain 407 484 IPR001012 GO:0005515
Psa4g3530 486 MobiDBLite consensus disorder prediction 197 218 - -
Psa4g3530 486 PANTHER PLANT UBX DOMAIN-CONTAINING PROTEIN 9 ISOFORM X1 1 250 - -
Psa4g3530 486 PANTHER PLANT UBX DOMAIN-CONTAINING PROTEIN 9 ISOFORM X1 273 486 - -
Psa4g3530 486 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 186 205 IPR003903 -
Psa4g3530 486 SUPERFAMILY Ubiquitin-like 396 480 IPR029071 -
Psa4g3530 486 SMART uim 226 245 IPR003903 -
Psa4g3530 486 SMART uim 186 205 IPR003903 -
Psa4g3530 486 MobiDBLite consensus disorder prediction 309 330 - -
Psa4g3530 486 PANTHER FAS-ASSOCIATED PROTEIN 273 486 - -
Psa4g3530 486 PANTHER FAS-ASSOCIATED PROTEIN 1 250 - -
Psa4g3530 486 CDD UBX 410 484 - -
Psa4g3530 486 SUPERFAMILY UBA-like 4 42 IPR009060 GO:0005515
Psa4g3530 486 SMART ubx_3 401 485 IPR001012 GO:0005515
Psa4g3530 486 Gene3D - 406 485 - -
Psa4g3530 486 ProSiteProfiles UBX domain profile. 410 482 IPR001012 GO:0005515
Psa4g3530 486 CDD UBA_Ubx1_like 6 42 - -
Psa4g3530 486 Pfam UBA-like domain 7 45 - -
Psa4g3530 486 Pfam Ubiquitin interaction motif 227 242 IPR003903 -
Psa4g3530 486 Pfam Ubiquitin interaction motif 187 202 IPR003903 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g3530 Psa-Chr4 298227556 298231467 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g3530 - K18726 gmx:100795740 519.62