Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g3474 ATGTTATACTCACTAGTACTAACTTCCAAAACCCTCAATGTCCACGAAACACAGTTACAACGATCATTCAAAACTTGTTCTAAACTATTCCACTCACTCAAACAACATGAACAGAACCTGTTCGACAATATTCCCCACCCAAATCCTTCTTCAGTTAACCGCTCCATGCTTAACCTCTTGCACAACAACCTCCCCTTTCAAGCTCTTTCCATATTCAAGAAACATTCTCAATTTCATTTTCTTCAAAATGTCGATGAGGTAACATTTGCACTGTCATTTAAGGCTTGTCGGGGAGAGTTTAATTTGGGTTCCCAAATTCATGGACTCGCGGTATCTACCGGGTTTGTTTCCCGTGTTACTGTGTCGAACTCGCTCATGAAGATGTACTGCAAAGCTGGGAAATTCGAATGTGCTTTGCGTGTTTTCGAGAATTTGAGTTATCCAGATATTGTTTCTTGGAATACTATTCTTTCTGGGTTTGAGAAGAGTGTTGAAGCTTTGAATTTTGCGTGTTTTATACATTTAAATGGGATAGTTTTTGATCCTGTGACATATACTACTGCGCTTTCGTTTTGTTGGGATAGGAATCAGGATGATCATGGTTTTTTATTTGGGTTGCAGTTGCATTCTCTTGTGGTTAAATGTGGATTTGGCTGTGAAGTTTTTATTGGGAATGCACTTGTGACAATGTATTCAAGGTGGGGGGAATTAGATGGGGCTGGGAGAGTGTTTGATGAAATGCCTATAAGAGATTTGGTTTCTTGGAATGCGATGCTTTCTGGGTATGCTCAAGAGGGAGAATGTTATGGGTTGGAAGCGGTTTTGTTGTTTGTCAACATGGTGAGACAAGGTATGTTGCTTGACCATGTTTCGTTCACGGGTACGGTTTCTGCTTGTGGTTATATTAGAAACTTGGAGTTAGGAAAGCAGATTCATGGTTTGGCTAAAAAATTAGGTTATGGAACACACGTTGCAGTTTGCAATGTTTTGATTTCGACTTATTCAAAGTGTAAGGTTCTTAATGATGCTAAGGCAGTTTTTCAGGCCATGAGTAATCGAAATGTAGTGTCTTGGACGACAATGATTTCTATTGATGAAGAGAATGTGGTGTCTCACTTTAATGCTATGAGAGTTGATGATGTGTATCCAAATGATGTTACGTTTATAGGATTATTGCATGGTATAACAACCAGGAATATGGTGATAGAAGGTCTAATGGTTCATGGGTTATGCATAAAAAGCTGTTTTTCATCAGAACAAAATGTCTCCAATAGCCTTATTACCATGTATGCCAAGTTTGAATCCACTCAAGAATCAAAGAAGATTTTTGAGGAGCTTAACTATCAAGGAACAATATCATGGAATGCATTAATTTCAGGGTATGCTCAAAATGGCTTGTGTAAAGAAACTTTCCTTACTTTTTTGTCTGCAATAAAGGAGATTATGCCCAACCAATACACATTTGGTAGTGTGTTAAATGCCATTGCCGCAGCTGAGGATATTTCTTTGAAACACGGGCAACGATGTCATTCTCACTTGATCAAACTTGGGTTAAACACTGACCCATTTGTTGCAGGGGCTCTGCTTGATATGTATGGTAAACGCGGAAGCATTAGCGAGTCTCAAAGAGTATTCGATGAGACACGCGAAAAAACCCAGTTTTCTTGGACAGGGATGATATCTGCCTATGCCCGCCATGGAGATTATGAGTCAGTAATGAGTTTATTTAAGGAAATGGAAAGGGAAGGAAGCAGTCCTGACTCCATCACTTTCCTTTCTGTTTTGGCAGCATGTTGTAGAAAGGGAATGGTTGATGTAGGCCATAGAATATTTGACTCAATGGTGTTAAAACATTCACTTGAACCATCCCCTGAGCATTATTCAGTTATGGTGGACATGTTGGGCCGTGTGGGACGGCTAGATGAGGCAGAAGAGTTGATGCATCAGATTCCAGGAGGACCTGGACTCTCAGTGTTGCAAAGCTTGCTTGGGTCTTGTAGATTACATGGGAATGTGGAGATGGCAGAGAGGGTTGCTGATAGTTTGATACTAAAGGACCCTGCAAGTTCAGGTCCTTATGTGTTAATGGCAAACTTGTATGCTGAGAAAGGAAAGTGGGACAAAGTTGCTGAAGTGCGAAAAGGGATGAGAGGGAGGGGAGTAAAGAAGGAAGTGGGATTTAGTTGGGTGGATGTTGCTAACGTTGATTCCTTGCATTTGCATGGTTTCTCATCTGGGGATAAGTCACACCCAGAGTCTGAGACTATTTGTAGAATGGCAGAGTTTTTGGGATTGCAAATAATATTTTCCAAACAGAGTAGAGTGGAGGAAGGTGATTGGTCTCGAGAGTTTGAACTGATGAGTCATGGATAG 2373 0.4058 MLYSLVLTSKTLNVHETQLQRSFKTCSKLFHSLKQHEQNLFDNIPHPNPSSVNRSMLNLLHNNLPFQALSIFKKHSQFHFLQNVDEVTFALSFKACRGEFNLGSQIHGLAVSTGFVSRVTVSNSLMKMYCKAGKFECALRVFENLSYPDIVSWNTILSGFEKSVEALNFACFIHLNGIVFDPVTYTTALSFCWDRNQDDHGFLFGLQLHSLVVKCGFGCEVFIGNALVTMYSRWGELDGAGRVFDEMPIRDLVSWNAMLSGYAQEGECYGLEAVLLFVNMVRQGMLLDHVSFTGTVSACGYIRNLELGKQIHGLAKKLGYGTHVAVCNVLISTYSKCKVLNDAKAVFQAMSNRNVVSWTTMISIDEENVVSHFNAMRVDDVYPNDVTFIGLLHGITTRNMVIEGLMVHGLCIKSCFSSEQNVSNSLITMYAKFESTQESKKIFEELNYQGTISWNALISGYAQNGLCKETFLTFLSAIKEIMPNQYTFGSVLNAIAAAEDISLKHGQRCHSHLIKLGLNTDPFVAGALLDMYGKRGSISESQRVFDETREKTQFSWTGMISAYARHGDYESVMSLFKEMEREGSSPDSITFLSVLAACCRKGMVDVGHRIFDSMVLKHSLEPSPEHYSVMVDMLGRVGRLDEAEELMHQIPGGPGLSVLQSLLGSCRLHGNVEMAERVADSLILKDPASSGPYVLMANLYAEKGKWDKVAEVRKGMRGRGVKKEVGFSWVDVANVDSLHLHGFSSGDKSHPESETICRMAEFLGLQIIFSKQSRVEEGDWSREFELMSHG* 791
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g3474 790 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 552 586 IPR002885 -
Psa4g3474 790 PANTHER OS07G0670000 PROTEIN 31 479 - -
Psa4g3474 790 PANTHER OS07G0670000 PROTEIN 480 574 - -
Psa4g3474 790 PANTHER OS07G0670000 PROTEIN 564 776 - -
Psa4g3474 790 TIGRFAM PPR: pentatricopeptide repeat domain 123 143 IPR002885 -
Psa4g3474 790 TIGRFAM PPR: pentatricopeptide repeat domain 326 356 IPR002885 -
Psa4g3474 790 TIGRFAM PPR: pentatricopeptide repeat domain 589 623 IPR002885 -
Psa4g3474 790 TIGRFAM PPR: pentatricopeptide repeat domain 554 588 IPR002885 -
Psa4g3474 790 Gene3D Tetratricopeptide repeat domain 524 737 IPR011990 GO:0005515
Psa4g3474 790 Gene3D Tetratricopeptide repeat domain 50 197 IPR011990 GO:0005515
Psa4g3474 790 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 587 622 IPR002885 -
Psa4g3474 790 PANTHER OS07G0578800 PROTEIN-RELATED 480 574 IPR045215 GO:0003723|GO:0009451
Psa4g3474 790 PANTHER OS07G0578800 PROTEIN-RELATED 564 776 IPR045215 GO:0003723|GO:0009451
Psa4g3474 790 PANTHER OS07G0578800 PROTEIN-RELATED 31 479 IPR045215 GO:0003723|GO:0009451
Psa4g3474 790 Pfam E motif 669 731 IPR046848 -
Psa4g3474 790 Pfam PPR repeat 452 469 IPR002885 -
Psa4g3474 790 Pfam PPR repeat 326 354 IPR002885 -
Psa4g3474 790 Pfam PPR repeat 225 248 IPR002885 -
Psa4g3474 790 Pfam PPR repeat 626 649 IPR002885 -
Psa4g3474 790 Pfam PPR repeat 123 143 IPR002885 -
Psa4g3474 790 Pfam PPR repeat 253 268 IPR002885 -
Psa4g3474 790 Pfam PPR repeat family 553 600 IPR002885 -
Psa4g3474 790 Gene3D Tetratricopeptide repeat domain 205 305 IPR011990 GO:0005515
Psa4g3474 790 Gene3D Tetratricopeptide repeat domain 412 512 IPR011990 GO:0005515
Psa4g3474 790 Gene3D Tetratricopeptide repeat domain 306 408 IPR011990 GO:0005515
Psa4g3474 790 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 251 287 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g3474 Psa-Chr4 294812507 294817457 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g3474 81 756 Glycoside Hydrolase AT3G49170 31.714 1.09e-105 342
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g3474 - - cam:101513383 1371.68