Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g2981 ATGAACAAACAACAACATCTCATCTTCACTTTCACAATTTCAATCTCCCTAACGATAGCAGTCGGACTCGTCTCAGCTCGTCTTTTCCCCGACGTCCCATTATTAATACCTCCGGTCATCGCTCCCAGCGGCGCGTGGGATGCTTTCCGGAACTTTACAGGTTGTCACCATGGCGAAAACTACAACGGTCTCTCCAATCTAAAAAACTACTTCCAGCGCTTCGGTTATTTCCCCCACGCGCCGCTGTTAAATTTTACAGACGATTTCGACGATGACCTTGCAGCTGCTATTAAAACTTATCAGAAGAATTTCAATCTTAATATAACTGGTGAACTCGATGAGAAGACTCTTCATCAGATTGTTTTGCCGCGATGCGGAGTTGCGGATATCATCAACGGTACAACCACCATGAACTCCGGCAGGGAGACAGAAACGACGTCCAATACCGATAGCAAGCCGCGGTTTCACACCGTGTCTCACTTCACTGTGTTTCCCGGGCAACCGAGATGGCCGGTGGGAAAGCAGGAGCTAACATACTCGTTCTACCCCGGTAACGAGCTTACGAAAACGGTGAAAAGCGTCTTCGCAACAGCATTTGCGCGGTGGTCGGAGGTTACCACGTTGAAGTTCACCGAAACAGAGTTGTATTCTAGCGCTGATATTAAGATCGGATTCTTCAGCGGCGACCATGGAGATGGTGAGCCGTTCGATGGAATTTTGGGGACTCTCGCGCATGCTTTCTCTCCAACGAACGGGAGGTTTCACCTTGACGCTGCTGAGGACTGGGTAGTTTCCGGCGATGTGTCGAAATCGGCGTTGTCGACGGCTGTTGATTTGGAATCGGTGGCGGTGCATGAAATTGGGCACTTGTTAGGGTTAGGTCACTCTTCCGTGGAAGAGGCGATTATGTTTCCGACGATATCTTCACGGTTGAAGAAAGTGGTGTTGACGGAAGATGATGTAAAAGGAATTCAATACATTTATGGTAGGAACCCAAGTTTCAATGGCTCCACGACTATGTCTTCGCCGGAGAGGAACTCCGGTAGCAGTGGTAGCAGCGTCGCGTCTCTGTGGTCCCCGTGGGGACTTTTCATTTCGTTGACATTTGCTTTTTCGCATTTGATATTATAG 1131 0.4889 MNKQQHLIFTFTISISLTIAVGLVSARLFPDVPLLIPPVIAPSGAWDAFRNFTGCHHGENYNGLSNLKNYFQRFGYFPHAPLLNFTDDFDDDLAAAIKTYQKNFNLNITGELDEKTLHQIVLPRCGVADIINGTTTMNSGRETETTSNTDSKPRFHTVSHFTVFPGQPRWPVGKQELTYSFYPGNELTKTVKSVFATAFARWSEVTTLKFTETELYSSADIKIGFFSGDHGDGEPFDGILGTLAHAFSPTNGRFHLDAAEDWVVSGDVSKSALSTAVDLESVAVHEIGHLLGLGHSSVEEAIMFPTISSRLKKVVLTEDDVKGIQYIYGRNPSFNGSTTMSSPERNSGSSGSSVASLWSPWGLFISLTFAFSHLIL* 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g2981 376 SUPERFAMILY PGBD-like 54 130 IPR036365 -
Psa4g2981 376 PRINTS Matrixin signature 120 133 IPR021190 GO:0004222|GO:0006508|GO:0008270
Psa4g2981 376 PRINTS Matrixin signature 195 210 IPR021190 GO:0004222|GO:0006508|GO:0008270
Psa4g2981 376 PRINTS Matrixin signature 219 247 IPR021190 GO:0004222|GO:0006508|GO:0008270
Psa4g2981 376 PRINTS Matrixin signature 282 307 IPR021190 GO:0004222|GO:0006508|GO:0008270
Psa4g2981 376 PRINTS Matrixin signature 316 329 IPR021190 GO:0004222|GO:0006508|GO:0008270
Psa4g2981 376 SUPERFAMILY Metalloproteases ("zincins"), catalytic domain 164 333 - -
Psa4g2981 376 Pfam Putative peptidoglycan binding domain 62 118 IPR002477 -
Psa4g2981 376 SMART col_5 166 330 IPR006026 GO:0006508|GO:0008237|GO:0008270
Psa4g2981 376 PANTHER MATRIX METALLOPROTEINASE 23 353 - -
Psa4g2981 376 CDD ZnMc_MMP 169 329 IPR033739 GO:0008237|GO:0008270
Psa4g2981 376 Pfam Matrixin 173 329 IPR001818 GO:0004222|GO:0006508|GO:0008270|GO:0031012
Psa4g2981 376 Gene3D Collagenase (Catalytic Domain) 52 334 IPR024079 GO:0008237
Psa4g2981 376 PANTHER MATRIX METALLOPROTEINASE 23 353 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g2981 Psa-Chr4 240997290 240999046 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g2981 - - aprc:113858627 520.776
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa4g2981 4 240997290 240999046 Psa4g2981 4 240997290 240999046 ECH