Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g2938 ATGAACGGTTTGTTATCACACCTTTCATCGTTTACCGCCACCATAGTCGGAAGAACCACTCGATTCGTCTCAAACAACGGAACTTCTTCCAATTTCTCGTTCCCGATAAAATCACTCCATTCTTGTGTTAGGTCTGAATTCGCGTTGACAGGGTTTCGCTGCTATTCCACTAAAAAATCACGCAAAAGTGGTTCTTCTCAGTTGCAGAAAGTAGAGGCGGAAACGACTATGGATCAGGAAAAAGATGCTTTTTATGTTGTCCGGAAAGGGGATGTTGTTGGAATTTATAATAGTCTCAGTGATTCTCAAGCTCAAGTTGGATCTTCGGTATGTGATCCTCCTGTTAGTGTATTTAAGGGATATTCATTGTCGAATGAAACAGAGGAATATCTTCTCTCGCATGGACTAAAGAATGCTTTATATACAATTAGAGCCTCTGATTTGAAAGAGGATTTGTTTGGATCACTTGTTCCATGTCCTTTCCAGGATCCTTCTTCTACCAAAGGGACCACATCAAATGGGGATACATCTAAAAAGAGAGCTATAGAAGTGCTCGGACAAGATAATGTGAAATCAACTGGTTTGACATCCATCTCTGAAGATCCCTTCAGAAAGCAAGTCAAGTTAGATCGTGCTGCTGCGAGCGAAGCATCTTCACTTGCAACTAAGACTTGTATTGTTGAGTTCGATGGTGCGTCAAAAGGAAATCCTGGAAGAGCTGGTGCTGGTGCTATTCTGCGATCCAAAGATGGGAATGTGATTCATAGGGTTCGTGAAGGCGTGGGTATAGCAACAAACAATTTTGCTGAATATCGTGCAGCGATATTGGGAATGAAATATGCTCTTAAAAAAGGATTCACTAATATCTGTATACAAGGGGACTCTAAACTTGTGTGCTCGCAGATTGATGGCTCATGGAAGGTCAAGAATGAGAGTTTGTCTACATTGTATAAGGTGGCCAAAGAACTCAAGGATAAATTTGCGTCATTTCAAATTAGTCATGTTTTAAGGGAATTCAACTCCGAGGCGGATGCTCAAGCAAATTTGGCCGTCCATCTTGCTGGTGAGGATTTTGAAATCTTCAATATTTGTGCGATGTACCTTTTCATTTGTATGCACCTGTGTCTAACCTTTCTCCACTTTTACAGATGGCTGCAAATTTGGCCGTCCATCTTGCTGATGGCCAAGTTCAGGAAGAGTAGTAGGTTAATTCATTCATGGCAGTTAATGATTATGAATCAGTAG 1245 0.4112 MNGLLSHLSSFTATIVGRTTRFVSNNGTSSNFSFPIKSLHSCVRSEFALTGFRCYSTKKSRKSGSSQLQKVEAETTMDQEKDAFYVVRKGDVVGIYNSLSDSQAQVGSSVCDPPVSVFKGYSLSNETEEYLLSHGLKNALYTIRASDLKEDLFGSLVPCPFQDPSSTKGTTSNGDTSKKRAIEVLGQDNVKSTGLTSISEDPFRKQVKLDRAAASEASSLATKTCIVEFDGASKGNPGRAGAGAILRSKDGNVIHRVREGVGIATNNFAEYRAAILGMKYALKKGFTNICIQGDSKLVCSQIDGSWKVKNESLSTLYKVAKELKDKFASFQISHVLREFNSEADAQANLAVHLAGEDFEIFNICAMYLFICMHLCLTFLHFYRWLQIWPSILLMAKFRKSSRLIHSWQLMIMNQ* 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g2938 414 ProSiteProfiles RNase H type-1 domain profile. 221 352 IPR002156 GO:0003676|GO:0004523
Psa4g2938 414 Gene3D - 223 355 IPR036397 GO:0003676
Psa4g2938 414 SUPERFAMILY Ribonuclease H-like 223 348 IPR012337 -
Psa4g2938 414 PANTHER POLYNUCLEOTIDYL TRANSFERASE, RIBONUCLEASE H-LIKE SUPERFAMILY PROTEIN 95 354 - -
Psa4g2938 414 Gene3D - 81 132 IPR037056 -
Psa4g2938 414 CDD RNase_HI_like 225 352 - -
Psa4g2938 414 Pfam Reverse transcriptase-like 229 350 IPR002156 GO:0003676|GO:0004523
Psa4g2938 414 PANTHER PUTATIVE-RELATED 95 354 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g2938 Psa-Chr4 235388301 235395281 Dispersed/Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g2938 - - gmx:100779114 475.707
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa4g2938 4 235388301 235395281 Psa4g2938 4 235388301 235395281 ECH