Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g2917 ATGAAGAATTGGATGAGCATGGTGGTGATGGGTGCAGTAACAAACTCTACATTTCTTCTATCTTCTCCACCCATTCTCAAAACCATTATCCCCTTTTCTCTCACCAAAACCTCTCCGTATCTCATTTCTCTCACCGCTCCCTCTCGCCGCTTCCTTTCCGCTTCTTCCCTTCCTTCGGTGGTCTCGGCTGACCACACCTTCAACTTCTCTGATTCCGGTGATGGAAACGGCGTTGCAGTTTCAAGGACGGGTCATAAAGTGCTTCTTAAAGGGATGAACTACTCTGAACTTGAAAAATGGGTTCAATCACATGGATACAGACCAGGGCAGGCTATGATGTTATGGAAGCGTATGTATGGGAACAATATTTGGGCGCATCATACTGATGAGTTGGAAGGCTTGAACAAAGATTTCAAGAAGATGTTGAGTGAAAATGCAGATTTCAAGGCACTTGCTGTGAAAGAAATTCACACGGCCTCTGATGGAACTAGGAAGATATTATTCACATTGGATGATGGGCTGGTCATAGAAACAGTTGTCATACCTTGTGATACCGGAAGGACTACCGTGTGTGTTTCCAGTCAAGTTGGATGTGCCATGAATTGTCAATTTTGCTATACTGGAAGAATGGGTCTTAAGAGACATCTTACTGCCGCAGAAATAGTTGAGCAGGCCGTTTTTGCCAGACGGCTATTCACAAGTGAAGTTGGTTCCATCACCAATGTTGTGTTTATGGGCATGGGGGAACCTCTTCATAACATTGATAATGTCATTAAAGCTGCAGATATTATGGTGGATGATCAAGGGCTTCATTTCAGTCCTCGCAAGGTCACTGTTTCAACCAGCGGGCTTGTTCCGCAGCTCAGACGTTTCCTTAACGAATCCAACTGCACGTTAGCTGTTAGTTTGAATGCAACTACTGATGAGGTAAGAAACTGGATCATGCCTATAAATCGAAAATATAAACTGGATTTGCTTCTTGAGACGCTTCGGGAGGAGCTTTGCTTGAAACACAAATATAAGGTTCTATTTGAGTATGTGATGCTTGAAGGAATTAATGACAGCAATGAAGATGCAAAGAGGCTTATCGAGCTCGTAAAGGGCATCCCTTGCAAGATCAATCTCATCTCATTCAATCCGCATAGTGGATCCTTCTTCAGACCAACTAAAGACGAAAGAATGATTGAGTTCAGAAATATGCTAGCTGAGGCAGGATGCCTAGTCCTTTTAAGACCCAGTAGAGGCGATGATCGGATGGCTGCGTGTGGTCAGCTAGGCAGCCCTGGCACCATTCAAGCTCCGATGCTCCGTGTTCCTAAGCAATTCCAAACGGCAGTACTCGGGACATTAGACTGA 1356 0.4454 MKNWMSMVVMGAVTNSTFLLSSPPILKTIIPFSLTKTSPYLISLTAPSRRFLSASSLPSVVSADHTFNFSDSGDGNGVAVSRTGHKVLLKGMNYSELEKWVQSHGYRPGQAMMLWKRMYGNNIWAHHTDELEGLNKDFKKMLSENADFKALAVKEIHTASDGTRKILFTLDDGLVIETVVIPCDTGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLFTSEVGSITNVVFMGMGEPLHNIDNVIKAADIMVDDQGLHFSPRKVTVSTSGLVPQLRRFLNESNCTLAVSLNATTDEVRNWIMPINRKYKLDLLLETLREELCLKHKYKVLFEYVMLEGINDSNEDAKRLIELVKGIPCKINLISFNPHSGSFFRPTKDERMIEFRNMLAEAGCLVLLRPSRGDDRMAACGQLGSPGTIQAPMLRVPKQFQTAVLGTLD* 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g2917 451 SFLD Radical SAM 85 427 IPR007197 GO:0003824|GO:0051536
Psa4g2917 451 Pfam 4Fe-4S single cluster domain 197 291 - -
Psa4g2917 451 Gene3D Aldolase class I 150 431 IPR013785 -
Psa4g2917 451 TIGRFAM rRNA_mod_RlmN: 23S rRNA (adenine(2503)-C(2))-methyltransferase 86 426 IPR027492 GO:0030488|GO:0070475
Psa4g2917 451 Gene3D - 86 148 - -
Psa4g2917 451 SUPERFAMILY Radical SAM enzymes 186 404 - -
Psa4g2917 451 SFLD adenosine C2 methyltransferase (RlmN-like) 85 427 IPR004383 GO:0006364|GO:0008173
Psa4g2917 451 CDD Radical_SAM 197 400 - -
Psa4g2917 451 PANTHER 23S RRNA METHYLTRANSFERASE 74 433 IPR040072 -
Psa4g2917 451 PANTHER RADICAL SAM SUPERFAMILY PROTEIN 74 433 - -
Psa4g2917 451 Hamap Dual-specificity RNA methyltransferase RlmN [rlmN]. 86 431 IPR027492 GO:0030488|GO:0070475
Psa4g2917 451 ProSiteProfiles Radical SAM core domain profile. 184 417 IPR007197 GO:0003824|GO:0051536
Psa4g2917 451 Pfam Radical SAM superfamily 193 359 IPR007197 GO:0003824|GO:0051536
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g2917 Psa-Chr4 234004688 234021134 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g2917 K06941 - gmx:100813692 705.286
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa4g2917 4 234004688 234021134 Psa4g2917 4 234004688 234021134 ECH