Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g2821 ATGTGTATTCTTCCTAGCAATCAAGCTCCATCGCAAGAACCACCTTCTCCTTCTTTACCTGAACGAACTAACACCGAACCCCAACCTGAACCTATCAACTCCGAACCTCAACCCCCACCCGAACCTGCTTCCGAGTCTCGCAAAAGAGCAATGCCAGAACCCTGCACTTCCGAACCAAATTCCAAACCTCACCACGAACCGAAACGTCAAGGTGTTTCTTCTGGTTCTACTCCACCACCATCTCCGCCGCCGTCGCTGATCACCGTCGAATTCACAGATGCTTTCGTGGAGGATTTGTTCAAGTATCTTCCGATGCCGTTAGATGAACTCAACCGTAAAAGTCCTTCTTCTAGGTCTATTCTTCCACCACCACCACCGCCAACCTCTTTCGGCGAGGATTTATTCAAGTTTCTTCCGTCGACTTTGTTTGATGAACCGCAACCGCTGAACACGGTCTTTCCTTCTTCTGAAGAAAATGAACCGATTCTTCTATCTCCTGACAAAGATTGGAGTCCTCCAGTTTCGAGCAATATTGATGAAAGAATCTCCGCTCTTGCCGACCCTATCGATCACGAGGATGTTTTCGATGCACCGTACCTTAATTGCTGGGATAAAAAAGTGAATCTTCGTCGCCGTAAACTTTCTGCCGTCATCTCCCCTTCCGTCAGTTACGTTTCCGTTGATCATTACGGTAATACTGACGTACCAATTGCGACACCTTTATCAAGATCGGTGGGAGCTGGAATTGAGAACCTGAGAAATACTTGTTTTATGGCTGCGATTCTTCAGTGCTTAACACATACTGGACAAATGTTTCTTGGTATTCGTTATTGCTTTCATGAGACTCCATGTAGTAGGGGTGGTTTCTGCGTTATTTGTGCTTTCCGTGACCACAATGACCGAGCTTTAGATCCTTCTCGAAACACAATTCATCCAGCACTGTTTGTTCGTAATGTGAACCAATTTTCAGATAATTTTGTAGCGCATAGCCAGGAGGATGCTCATGAGTTTATGATATGTGCCTTGAATAAACTAAAAAGTGCCTTTCCAGAAGGTCACAATAATCTAATTGAACAAATATTTGGAGGCAAAACTGTTAGCCAACTTCGATGTCGCAGCTGTGGTTTCTCTTCTGATACCATTGAGCCAATATTTGACTTGGGTTTAGCGGTAGATAACGTGAGTACCGTTGAAAGGGCTCTGGACTCTTATATCATGGTAGAAAATATGGATGGGATGTTTAAATGTAGTGGCTGTCACCAAGAAGTATACATGGAGAAACAGCTTTTGATTTATAAGGCACCAGAAATTGCAGTACTACATTTGAAAAGGTTTAAAAAAGACGGAAGCACTTATGGAAAGATTCAAAATCATGTTTATTTCACTCCGAAGTTGGATTTGAAGCCTTATACCTCTGCTAAAGGCAGGGAAGATCCAATTTTGATGTATCATCTATACGCGGTTGTTGTGCATAGCGGATCCAGAGCTAATTCAGGGCATTACTTTAGCTATGTGCGTTCTGATGAAGACACATGGCATTTGATGGATGACTCTAAGGTTTTAAGCGTTTCTGAAGAACATGTCCTGGCTCAACCAGCATACATGCTGTTTTATGCAAAACAAGGTACAGCCTGGTTCTCTAGTATTTTGAAAACTGAAGAGAGATCAGTTTTGAAATCAAAATCCATAGACAACACACAGGATTTTGGTAGTGGAGAAAAGATTTTTTTTGATCTTACGGAAGCAACTGATGATGATTCGATGCGGGGAAATGATAGCGATTCGACGTATGGAATTGATAGTGGTTCGACGTATGGAATTGATACTGATTCGCTCAATGGGAAAGAGAAGACTGCGAGTGACATGGAAGAAGAAGAAGAATGTGATTCGGCGGGTGCAAATGATAAGGATTCCAAGGATGCAGATGATAATGATTCCAAGGTTACAAATGAGAAGTCTGGGAGTGGCATGGATGGAGAAGAATGTGATTTGGTAGATGATGATAAGGATTCCAAGGATGCAGATGATAATGATTCCAAGGTTACAATTGAGAAGTCTGTAACTGGCATGGATGGAGAAGAATGTGATTTGGTAGATGCAAATGATGATAAGGATTCCAAGGATGCAGATGATGATGATTCCAAGGTTATAAATGAGAAGTCTGCGAGTCGCATGGATGTAGAAGAATGTGATTTGGCGGATGCAAATGATGATAAGGATTCCAAGGATGCAGATGATGATGATTCCAAGGATACAAATGAGAAGTCTGTGAGTGGCATGGATGTAGAAGAATGTGATTTGTCGGGTGCAAATGATAATGATTCGAAGGATGCAAGTGTGAAATCTGTGAGTGGCATGGATGTAGTAGAATGTGATTTGTCGGATGCAAATGATGAAAATGATTCCAAGGATGCAGATGATAAAGATTCCAAGGATGCAAATGAGAAGTCTGTGAGTGGCATGGATGGAGCTGATGGTAATGATTCTAAGGATGCAAATGATAATGATTCCAATGTTACAAATGAGAAGTCTGTGAATGGCATGGATGTAGAAGAATGTGATTTGGCGGATGCAATTGATAAGGACTCCAAGGATGCAAATGATGATAATGATTCCAAGTAG 2622 0.4195 MCILPSNQAPSQEPPSPSLPERTNTEPQPEPINSEPQPPPEPASESRKRAMPEPCTSEPNSKPHHEPKRQGVSSGSTPPPSPPPSLITVEFTDAFVEDLFKYLPMPLDELNRKSPSSRSILPPPPPPTSFGEDLFKFLPSTLFDEPQPLNTVFPSSEENEPILLSPDKDWSPPVSSNIDERISALADPIDHEDVFDAPYLNCWDKKVNLRRRKLSAVISPSVSYVSVDHYGNTDVPIATPLSRSVGAGIENLRNTCFMAAILQCLTHTGQMFLGIRYCFHETPCSRGGFCVICAFRDHNDRALDPSRNTIHPALFVRNVNQFSDNFVAHSQEDAHEFMICALNKLKSAFPEGHNNLIEQIFGGKTVSQLRCRSCGFSSDTIEPIFDLGLAVDNVSTVERALDSYIMVENMDGMFKCSGCHQEVYMEKQLLIYKAPEIAVLHLKRFKKDGSTYGKIQNHVYFTPKLDLKPYTSAKGREDPILMYHLYAVVVHSGSRANSGHYFSYVRSDEDTWHLMDDSKVLSVSEEHVLAQPAYMLFYAKQGTAWFSSILKTEERSVLKSKSIDNTQDFGSGEKIFFDLTEATDDDSMRGNDSDSTYGIDSGSTYGIDTDSLNGKEKTASDMEEEEECDSAGANDKDSKDADDNDSKVTNEKSGSGMDGEECDLVDDDKDSKDADDNDSKVTIEKSVTGMDGEECDLVDANDDKDSKDADDDDSKVINEKSASRMDVEECDLADANDDKDSKDADDDDSKDTNEKSVSGMDVEECDLSGANDNDSKDASVKSVSGMDVVECDLSDANDENDSKDADDKDSKDANEKSVSGMDGADGNDSKDANDNDSNVTNEKSVNGMDVEECDLADAIDKDSKDANDDNDSK* 874
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g2821 873 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 238 629 - -
Psa4g2821 873 MobiDBLite consensus disorder prediction 585 873 - -
Psa4g2821 873 MobiDBLite consensus disorder prediction 700 761 - -
Psa4g2821 873 PANTHER UBIQUITINYL HYDROLASE 1 238 629 - -
Psa4g2821 873 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 247 541 IPR028889 -
Psa4g2821 873 MobiDBLite consensus disorder prediction 673 692 - -
Psa4g2821 873 MobiDBLite consensus disorder prediction 592 613 - -
Psa4g2821 873 MobiDBLite consensus disorder prediction 1 87 - -
Psa4g2821 873 Gene3D Cysteine proteinases 243 542 - -
Psa4g2821 873 SUPERFAMILY Cysteine proteinases 243 540 IPR038765 -
Psa4g2821 873 MobiDBLite consensus disorder prediction 31 45 - -
Psa4g2821 873 MobiDBLite consensus disorder prediction 796 818 - -
Psa4g2821 873 Pfam Ubiquitin carboxyl-terminal hydrolase 248 538 IPR001394 GO:0004843|GO:0016579
Psa4g2821 873 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 483 501 IPR018200 GO:0004843|GO:0006511
Psa4g2821 873 MobiDBLite consensus disorder prediction 10 24 - -
Psa4g2821 873 MobiDBLite consensus disorder prediction 857 873 - -
Psa4g2821 873 MobiDBLite consensus disorder prediction 632 659 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g2821 Psa-Chr4 225486376 225490814 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g2821 247 540 Miscellaneous Gene Families AT2G24640 34.084 1.57e-46 172
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g2821 K11855 - gmx:100808015 319.701
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa4g2821 4 225486376 225490814 Psa4g2821 4 225486376 225490814 ECH