Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g2772 ATGGTGGAGCCTTTAACTAAGGTTGTGTTAAATCCGGTTCAGAGAATTATAGAAGAAAAATTTATTAGTCTATTGCGTTCATGTAAATCCTGCGAACGTCTCTACCAGATTCAAGCCCAAATAGTTACCCATGGACTCCAACACAACGATTTCGTCGCGCCGAGTTTCATCGCAACGTGTTCACGACTCGGACGAATGCAACATGCACGAAAACTGTTTGATCAAATTCCCGAACCAAATACTGCTACTTGGAACGTTATGTTCCGTGGTTACTCCCAAAACGAACTTCACCGTGACGCTGTTGTTTTGTTCGGGAAACTGAACCGTGCTGTGGCGATGCCGAATTGTTTCACGTTTCCGATGATCATTAAGTCGTGTGCGAAGTCGAAAGGTTTTGTAGAAGGTGAAGAGGTTCATTGTTGTGCTGCAAAGCGAGGGTTTAAGTTGAATTCGTTTGTGGCTACTTCGTTGATTGATATGTACTCGATGAAGGGGTGTATTGAAGATGCTTATAAAGTGTTTGGTGAAATGCGTGATAGGAATGTTGTTGTTTGGACTGCTATTATAAATGGTTATATATCTTGTGGTGATGTGGCTTCTGGGAGAAGACTTTTTGATTTAGCGCCTGAGCGGGATGTTGTAATGTGGAGCGTTTTAATTTCAGGTTACATTGAAATGAAGAATATGGTTGTTGCAAGAGAGCTTTTTGATAAGATGCCGAACCGGGATACGATGTCGTGGAATGCTATGTTGAACGGTTATGCTGCTAATAGGGATGTTGAGTTGTTTGAGAAAATGTTTGATGAAATGCCGGAAAGGAATGTATATTCTTGGAATGGACTAATTGGTGGTTATGTAAAAAATGATCTTTTTTCGGCTGCTTTGGAGTCGTTTAAACGGATGTTGGTTGAGGGTCATGTGGTGCCTAATGATTTCACGCTTGTGGCTGTGTTATCTGCGTGTTCGAGATTGGGAGCACTTGATATGGGGAAGTGGGTGCATGTGTATGCAGAGAGTATTGGGTATAAAGGAAACTTGTTTGTTGGGAATGCTTTGATTGATATGTATGCAAAATGTGGTGTTATTGAAAACGCGGTTGCTGTATTTAACTGTTTGGATAGAAAAGATATAATCAGTTGGAACACTATCGTTAATGGACTAGCCATACATGGACACGCACCCGACGCGTTGAGTATGTTTGATAGAATGAAGAGTGAGGGAGAAGAACCGGATGGGGTTACTTTTGTTGGGATATTGTTTGCTTGTACTCATATGGGTTTGGTTAAAGATGGTTTTTTGTATTTCAAATCAATGGTTGATGATTATTCAACTGTACCTCAAATTGAGCATTATGGATGCATGGTTGATTTGCTTGGAAGAGCTGGTCTTTTAGACAAAGCATTGAGTTTTATAAGAAATATGCCAATGGAACCTGACGCGGTTATTTGGGCTGCATTACTAGGAGCATGTAGGATATACAAGAATGTTGAGATAGCTGAGCTGGCTCTGCAGAGGCTCATTGAACTTGAACCAAAAAACCCTGCAAATTTCGTCATGCTTTCGAACATATATAAAGATTTGGGGAAATGGGAAGATGTTGCCAGATTGAAGGTTGCAATGAGAGATACTGGGTTTAGAAAATTGCCAGGATGTAGTGTTATTGAGTGTAATGATAGTGTGGTGGAATTTTATTCATTAGATGAGAGGCATTCAGAGACAGAAAGTATATATAGGGTATTGAAGGGATTGACAGTGTTGTTGAGATCACATGGATATGTTCCAAATCTCACGGATGTTGCTCAGGGAATCTGA 1812 0.4051 MVEPLTKVVLNPVQRIIEEKFISLLRSCKSCERLYQIQAQIVTHGLQHNDFVAPSFIATCSRLGRMQHARKLFDQIPEPNTATWNVMFRGYSQNELHRDAVVLFGKLNRAVAMPNCFTFPMIIKSCAKSKGFVEGEEVHCCAAKRGFKLNSFVATSLIDMYSMKGCIEDAYKVFGEMRDRNVVVWTAIINGYISCGDVASGRRLFDLAPERDVVMWSVLISGYIEMKNMVVARELFDKMPNRDTMSWNAMLNGYAANRDVELFEKMFDEMPERNVYSWNGLIGGYVKNDLFSAALESFKRMLVEGHVVPNDFTLVAVLSACSRLGALDMGKWVHVYAESIGYKGNLFVGNALIDMYAKCGVIENAVAVFNCLDRKDIISWNTIVNGLAIHGHAPDALSMFDRMKSEGEEPDGVTFVGILFACTHMGLVKDGFLYFKSMVDDYSTVPQIEHYGCMVDLLGRAGLLDKALSFIRNMPMEPDAVIWAALLGACRIYKNVEIAELALQRLIELEPKNPANFVMLSNIYKDLGKWEDVARLKVAMRDTGFRKLPGCSVIECNDSVVEFYSLDERHSETESIYRVLKGLTVLLRSHGYVPNLTDVAQGI* 604
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g2772 603 SUPERFAMILY TPR-like 462 532 IPR011990 GO:0005515
Psa4g2772 603 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 212 242 IPR002885 -
Psa4g2772 603 Pfam PPR repeat 183 210 IPR002885 -
Psa4g2772 603 Pfam PPR repeat 155 182 IPR002885 -
Psa4g2772 603 Pfam PPR repeat 214 242 IPR002885 -
Psa4g2772 603 Pfam PPR repeat 276 305 IPR002885 -
Psa4g2772 603 Pfam PPR repeat 246 275 IPR002885 -
Psa4g2772 603 Pfam PPR repeat 450 475 IPR002885 -
Psa4g2772 603 TIGRFAM PPR: pentatricopeptide repeat domain 276 310 IPR002885 -
Psa4g2772 603 TIGRFAM PPR: pentatricopeptide repeat domain 214 242 IPR002885 -
Psa4g2772 603 TIGRFAM PPR: pentatricopeptide repeat domain 378 411 IPR002885 -
Psa4g2772 603 TIGRFAM PPR: pentatricopeptide repeat domain 246 275 IPR002885 -
Psa4g2772 603 TIGRFAM PPR: pentatricopeptide repeat domain 155 183 IPR002885 -
Psa4g2772 603 Pfam E motif 493 555 IPR046848 -
Psa4g2772 603 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 80 114 IPR002885 -
Psa4g2772 603 Pfam PPR repeat family 375 422 IPR002885 -
Psa4g2772 603 Pfam PPR repeat family 79 128 IPR002885 -
Psa4g2772 603 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 150 184 IPR002885 -
Psa4g2772 603 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 229 257 - -
Psa4g2772 603 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 261 594 - -
Psa4g2772 603 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 192 226 - -
Psa4g2772 603 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 14 196 - -
Psa4g2772 603 Gene3D Tetratricopeptide repeat domain 334 561 IPR011990 GO:0005515
Psa4g2772 603 PANTHER PENTATRICOPEPTIDE REPEAT PROTEIN-RELATED 261 594 - -
Psa4g2772 603 PANTHER PENTATRICOPEPTIDE REPEAT PROTEIN-RELATED 192 226 - -
Psa4g2772 603 PANTHER PENTATRICOPEPTIDE REPEAT PROTEIN-RELATED 14 196 - -
Psa4g2772 603 PANTHER PENTATRICOPEPTIDE REPEAT PROTEIN-RELATED 229 257 - -
Psa4g2772 603 Gene3D Tetratricopeptide repeat domain 135 228 IPR011990 GO:0005515
Psa4g2772 603 Gene3D Tetratricopeptide repeat domain 2 134 IPR011990 GO:0005515
Psa4g2772 603 Gene3D Tetratricopeptide repeat domain 229 333 IPR011990 GO:0005515
Psa4g2772 603 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 376 410 IPR002885 -
Psa4g2772 603 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 243 277 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g2772 Psa-Chr4 223087123 223089420 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g2772 67 595 Glycoside Hydrolase AT3G49170 32.867 8.41e-97 313
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g2772 - - mtr:MTR_8g066250 1085.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa4g2772 4 223087123 223089420 Psa4g2772 4 223087123 223089420 ECH