Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g2528 ATGGAATCTGTGTCAAAGAACCCTAGAACTAAAGTTGCGAAATATCCATCCAAAAACCCTAATAGACAATCAACACCAATTGCTAAACCTAATCATCAAACCAATGAGTTTCCATCTCATCTTGATACCCAAAACGTATCATCAACAGCTCGAACCCTTTGCAATCTACTCACCCGAACATCCCCTCAGGAGATTGACTCTGCTTTATCCTCTTCTGGGATTCATCCTTCTGAAGAATGTGTTCATGAGGTTCTTAAGCTTTCTTATAATTACCCTTCTTCGGCCATCAAGTTTTTCCGGTGGGCCGGGCGTTTGAGAAAACACTCGGCCCACGCGTGGAACTTGATGGTTGATTTATTGGGCCGGAATCAGCTTTTCGAGCCCATGTGGGATGCTGTTAGGACTATGAAGCAAGAAGGTGTGCTGTCTTTGCCCACCTTTGTTTCGGTTTTTCAGAGCTATTGTATGGCTGGGAGGGTTAATGAGGCTGTTATGAGTTTTGATGTGATGGATAGGTATGATGTTGAGAAGAATGTTGTGGCAGTTAATTCCTTGCTTAGCGCGATTTGTCGCGAGGAGAATCAGACTTCGGCGGGTGTGGAGTTTTTGGAGAAGGTTAAGGGGAAGGTTGATTTGGATGGGGATAGTTTTGCGATATTGTTGGAGGGATGGGAGAAGGAAGGGAATCCTGCTAAAGCGAAGAGTACTTTTGGTGAGATGGTGATTCGGGTTGGTTGGAGTCGGGATAATGTAGCGGCTTACGACGCGTTTTTGATGACTCTTCTTCAAGCTTTGCAGTTTGACGAGGTTGTGACGTTTCTTAAAGTTCTGAAGGACAATGACTGTTTTCCAGGTTTGAAGTTCTTTACCAATGCTCTTGATGTGCTTGTTAAGCGAAATGATGCTCTTCATGCTATCCCTTTGTGGGATGTCATGGTTGTTAGTGGATTATTGCCTAACTTGATCATGTATAATGCCATGATTGGGTTGCTTTGCAACAATGGCGAGATTGATCACGCGTTTCGCCTGCTCGATGAGATGGTTCTCCATGGAGCTTTTCCAGACTCTCTGACGTATAACATGATATTTGAGTGTTTGGTGAAGAACAAAAGGGTTCGTGAAACGGAGAGGTTCTTTGCCGAGATGATCAAGAATGAATGGCTGCCCACAGGTTCTAATTGTGCTGTGGCCATCGAAATGTTATTTGATTGCGATGACCCTGATGCAGCACTTGAGATTTGGAGTCACATGGTTGAAACCCATGTAGGGGTACTTGAGGTGAGTGCAAATATCTTGCTCATTGGTCTTTGTAAATTGGGTAGATTGTCGGAGGTGAGAAGGTTTGCAGAAGAAATGCTTGATAAAAGGATCGTCATATATGAATCTACAATGACCAAGTTGAAGGAAGTGTTCCGTAAGGATGGTAGAAGTGCAAGAGACAGATTTGATACTCTTTACAGGAGATGGAAAGCTCAAGTCAAGTTGTAA 1488 0.4362 MESVSKNPRTKVAKYPSKNPNRQSTPIAKPNHQTNEFPSHLDTQNVSSTARTLCNLLTRTSPQEIDSALSSSGIHPSEECVHEVLKLSYNYPSSAIKFFRWAGRLRKHSAHAWNLMVDLLGRNQLFEPMWDAVRTMKQEGVLSLPTFVSVFQSYCMAGRVNEAVMSFDVMDRYDVEKNVVAVNSLLSAICREENQTSAGVEFLEKVKGKVDLDGDSFAILLEGWEKEGNPAKAKSTFGEMVIRVGWSRDNVAAYDAFLMTLLQALQFDEVVTFLKVLKDNDCFPGLKFFTNALDVLVKRNDALHAIPLWDVMVVSGLLPNLIMYNAMIGLLCNNGEIDHAFRLLDEMVLHGAFPDSLTYNMIFECLVKNKRVRETERFFAEMIKNEWLPTGSNCAVAIEMLFDCDDPDAALEIWSHMVETHVGVLEVSANILLIGLCKLGRLSEVRRFAEEMLDKRIVIYESTMTKLKEVFRKDGRSARDRFDTLYRRWKAQVKL* 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g2528 495 Coils Coil 492 495 - -
Psa4g2528 495 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN-RELATED 26 492 - -
Psa4g2528 495 TIGRFAM PPR: pentatricopeptide repeat domain 322 355 IPR002885 -
Psa4g2528 495 TIGRFAM PPR: pentatricopeptide repeat domain 428 458 IPR002885 -
Psa4g2528 495 TIGRFAM PPR: pentatricopeptide repeat domain 358 390 IPR002885 -
Psa4g2528 495 PANTHER OSJNBA0019D11.15 PROTEIN 26 492 - -
Psa4g2528 495 MobiDBLite consensus disorder prediction 1 32 - -
Psa4g2528 495 Gene3D Tetratricopeptide repeat domain 60 199 IPR011990 GO:0005515
Psa4g2528 495 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 355 389 IPR002885 -
Psa4g2528 495 Pfam PPR repeat 427 456 IPR002885 -
Psa4g2528 495 Pfam PPR repeat 146 173 IPR002885 -
Psa4g2528 495 Pfam PPR repeat family 319 368 IPR002885 -
Psa4g2528 495 Gene3D Tetratricopeptide repeat domain 287 494 IPR011990 GO:0005515
Psa4g2528 495 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 320 354 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g2528 Psa-Chr4 203582824 203584311 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g2528 107 487 Glycosyltransferase AT1G05670 22.396 5.65e-20 91.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g2528 - - gmx:100796114 737.258
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa4g2528 4 203582824 203584311 Psa4g2528 4 203582824 203584311 ECH