Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g2375 ATGTTGCAAGAGATGTGGAATGCTCCTCCGGGTTTCAGACCATCCAAATCTGCCCCTTCTTCACCTGCGAAACCTCTCGGTGTTTCTAGAACCCGTTCGGAATCATTTCACATCACTCATAAGGTTCCTGTTGGGGATTCTCCTTATGTCAGAGCAAAAAACGTTCAGTTGGTGGATAAGGATCCGGAGAGAGCGATTCCGTTGTTTTGGTCGGCGATAAATGCGGGAGATAGAGTGGATAGTGCTTTGAAAGATATGGCTATTGTTATGAAGCAACAGAATAGGGCTGAAGAAGCCATTGAAGCTATTAAATCACTTAGAATTAGATGCTCAGATCAAGCACAAGAGTCGCTTGATAATATCCTTTTGGATCTTTACAAGAGATGTGGTAGACTTGATGACCAAATTGCCCTATTGAGGCACAAGCTGTATTTAATCCAACAAGGGTTGGCTTTCAACGGCAAACGCACAAAGACGGCGAGATCTCAAGGGAAGAAGTTTCAAGTCTCAGTGGAACAAGAAGCCACTAGATTATTGGGAAACTTGGGATGGGCACTGATGCAACAAAACAACTACATTGAAGCAGAAGAAGCCTATCGCCGTGCGCTTACGCTAGCTCCGGACAACAACAAGATGTGCAATTTAGGCATATGTTTGATGAAACAAGGGAGAATTTCTGAAGCTAAAGAGACTCTCCATAGAGTGAAACCTGCAGTTACAGATGGTCCAAGAGGTTCAGATTCTCATCTGAAAGCCTATGAAAGAGCACAACAAATGCTCAAAGATCTCGAATCCGAAATGATGAACAAAGGAGGAGTTGATAGGGTTGAACAAAGTAGGCTGTTTGAAGCTTTCCTTGGTTCTTCATCAATTTGGCAACCTCAGCCTTGTAAGGATCACATATCCACAAGTTTGCCGCCAATCCGAACGACAACAGCAGCAAAAATAGTTCAAGATGAATTTGGTGATGAAAACATCAACTCCAACATAGTGAAAAGCCAGACATCAAAGTTTGGTCCTTTGGTGAACAACAACAATTCACTTAATGTTGCAGCGGCACCATTTTATGCAGCACCAAAAACCTCTTTGAAGGAGTCAAATGAGAATTTGAATTTGTCGGAGACACTTAAGAGAACAAGATCTGGAAATGCTGCAGGATCAATGAGAGTGGTTAATGGTGCAGAATTAGGTGTGCCTGTGCCTGGGAGCAAAGCAAGAAGGCTTTCATTTGAGAAGAATAAGTTGTGTGATTTGTTACCTGATACTAAGGATTTTGAAGATGCTATTCTGTCTTCTATTTTGGGGGCTTCAAGTGAGTCCAATGGGATTTTGACTAAAAAATCTGACAAGAGGAGGCTTAAGGTTTTTGAAGATATTACATTATCTTTGAGTCCAAAGGCTTGA 1404 0.4202 MLQEMWNAPPGFRPSKSAPSSPAKPLGVSRTRSESFHITHKVPVGDSPYVRAKNVQLVDKDPERAIPLFWSAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRIRCSDQAQESLDNILLDLYKRCGRLDDQIALLRHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEEAYRRALTLAPDNNKMCNLGICLMKQGRISEAKETLHRVKPAVTDGPRGSDSHLKAYERAQQMLKDLESEMMNKGGVDRVEQSRLFEAFLGSSSIWQPQPCKDHISTSLPPIRTTTAAKIVQDEFGDENINSNIVKSQTSKFGPLVNNNNSLNVAAAPFYAAPKTSLKESNENLNLSETLKRTRSGNAAGSMRVVNGAELGVPVPGSKARRLSFEKNKLCDLLPDTKDFEDAILSSILGASSESNGILTKKSDKRRLKVFEDITLSLSPKA* 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g2375 467 Coils Coil 246 266 - -
Psa4g2375 467 Coils Coil 89 109 - -
Psa4g2375 467 PANTHER PROTEIN POLLENLESS 3-LIKE 2 5 464 IPR044961 -
Psa4g2375 467 ProSiteProfiles TPR repeat profile. 176 209 IPR019734 GO:0005515
Psa4g2375 467 PANTHER PROTEIN POLLENLESS 3-LIKE 2 5 464 - -
Psa4g2375 467 SMART tpr_5 176 209 IPR019734 GO:0005515
Psa4g2375 467 Gene3D Tetratricopeptide repeat domain 49 271 IPR011990 GO:0005515
Psa4g2375 467 SUPERFAMILY TPR-like 57 260 IPR011990 GO:0005515
Psa4g2375 467 Pfam Tetratricopeptide repeat 178 209 IPR001440 GO:0005515
Psa4g2375 467 ProSiteProfiles TPR repeat region circular profile. 176 209 - -
Psa4g2375 467 MobiDBLite consensus disorder prediction 1 34 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g2375 Psa-Chr4 191591660 191593867 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g2375 - - gmx:100788369 703.745
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa4g2375 4 191591660 191593867 Psa4g2375 4 191591660 191593867 ECH