Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g2361 ATGTGGACAATGGGGGATGATTTCCAGTATCAATATGCTGAGTCTTGGTTCAAGCAAATGGATAAATTAATTCACTATGTTAATAAGGATGGAAGGGTGAATGCCTTGTATTCCACTCCATCTATTTATACCGATGCTAAAAACGCGGCAAATCAATTGTGGCCATTGAAAACCGATGACTACTTCCCGTATGCTGATGGACCATATGCATATTGGACAGGCTTTTTCACTAGTCGCCCGGGCTTAAAGCGATATGTTAGATTCCTTAGTGGATATTACTTGGCCATGCGTCAACTTGAATTTTTCGCCGGAAACCGATCGACTATATACAATACTTTTGACCTTGCAGATGCTCTGGGAATTGCACAGCACCATGATGCTGTCTCCGGAACTGCCAAGCAACATACAACTGATGACTACGCGAAACGTTTGGCTATTGGAGCCTCTAAGGCTGAAGCAGTTGTTAGTTCTTCTTTGGCATATCTTGCTAGTAAGCACTCAAGTGATCAAAGTTCAGCAGTTGCATCAACCTTTTCCCAGTGTCAACTACTCAATATCAGTTACTGCCCTCCAACCGAAGACAATATTCCAGAAGCTAAAGATTTGGTAGTGGTGCTGTATAACCCTCTTGGATGGAATCGTACTGATATCGTCAGAATACCAGTTAATGAAGCTAATCTTGCGGTCAAAGATTCATCTGGAAACAACCTTGAAGTACAATATGTGGATGTGGACAGTGTTACAGCAGATTTAAGAACATTTTATGTGAAGGCCTATTTGGGATTGTCTCCGAAAAAAGCCCCAAAATATTGGCTTCTGTTTCAAGTATCAGTACCTCCACTTGGTTGGAGCACATACTTCATTTCTAAGGCAACTGGAAAAAGTACAAGGAGAAAGGGAGATCTCTCACACCTCAACAATAAGAAGGGTGAGAACATTGAGATTGGACCTGGAAAGTTAAAGATGTCATTTTCTTCAACCTCTGGACTACTCGAACGGATGTATAATTCCAAAACTGGAGTAAATATACCAATTCAGCAAAACTACCTTTGGTATGCCTCTAGTGAGGGTGATATTCGTGATGTTCAGGCATCTGGTGCATATATATTCCGCCCAAATGGATCCTCTCCATCTATTGTTTCAAGATCGGTGTCCCTCAAAGTAGTCCGAGGACCACTAGTTGACGAGGTTCATCAGACATTTAGTTCTTGGATTTACCAGGTTACTAGGCTGTACAAGGGCAAAGACCATGCGGAAATTGAATACACTATTGGTCCGATTCCTGACGATGATAGAGTTGGGAAAGAGGTAATCACAAGAATGACAACAAATATGGCCACAAACAAGGAGTTTTATACTGATTCTAATGGAAGAGACTTTCTGAAACGGGTTCGAGATCATAGGGAAGATTGGCCACTTCAAGTTACTCAGCCTGTAGCAGGAAACTACTATCCACTCAATCTTGGGATTTATACCAAGGATAAGAAATCTGAATTCTCAGTCTTAGTTGATCGTGCCACCGGTGGATCCAGCATCAAAGATGGTGAGGTGGAACTGATGCTTCATAGGCGCCTTCTCAATGATGATGGTAGAGGAGTAGGGGAATCACTCCATGAAGATGTTTGCACACAGGATCCTAATGTTACATGTGAAGGACTAAAAGTAAGAGGAAATTACTATATCAGCCTCGACAATGTCGGAGCTGGTTCACGCTGGCGTCGTACAACTGGTCAAGAAATTTACTCACCACTCTTATTGGCTTTCACGCATGAGAATGCAGAAAATTGGAAGTCCTCTCATTTGACAAAAGGAACTATCATGGATCCAAATTACAGCTTGCCTCCTAATGTTGCATTGTTAACTCTTGAGGAGTTGGATGGTGGAATTGTTCTTCTCCGTTTGGCACATCTATACGAGCAAAGTGAAGATGCTCAATATTCAACTCTAGCCAAAGTTGAACTGAAAAAGTTGTTTGCCACAAAAACGATAAAGGAGTTGAAAGAGGTAAGCTTATCAGCTAACCAAGAGAAGTCAAAAATGAAGAAGATGACATGGAAGGTTGAAGGGGACAAAGGACAAGAACCTCAAGCAGTTAGGGGAGGTTCTGTCAGCACTTCAGATTTTGTTGTCGAGCTTGGTCCTATGGAAATTCGTACTTTCCTGTTGAAGTTTTAA 2175 0.4175 MWTMGDDFQYQYAESWFKQMDKLIHYVNKDGRVNALYSTPSIYTDAKNAANQLWPLKTDDYFPYADGPYAYWTGFFTSRPGLKRYVRFLSGYYLAMRQLEFFAGNRSTIYNTFDLADALGIAQHHDAVSGTAKQHTTDDYAKRLAIGASKAEAVVSSSLAYLASKHSSDQSSAVASTFSQCQLLNISYCPPTEDNIPEAKDLVVVLYNPLGWNRTDIVRIPVNEANLAVKDSSGNNLEVQYVDVDSVTADLRTFYVKAYLGLSPKKAPKYWLLFQVSVPPLGWSTYFISKATGKSTRRKGDLSHLNNKKGENIEIGPGKLKMSFSSTSGLLERMYNSKTGVNIPIQQNYLWYASSEGDIRDVQASGAYIFRPNGSSPSIVSRSVSLKVVRGPLVDEVHQTFSSWIYQVTRLYKGKDHAEIEYTIGPIPDDDRVGKEVITRMTTNMATNKEFYTDSNGRDFLKRVRDHREDWPLQVTQPVAGNYYPLNLGIYTKDKKSEFSVLVDRATGGSSIKDGEVELMLHRRLLNDDGRGVGESLHEDVCTQDPNVTCEGLKVRGNYYISLDNVGAGSRWRRTTGQEIYSPLLLAFTHENAENWKSSHLTKGTIMDPNYSLPPNVALLTLEELDGGIVLLRLAHLYEQSEDAQYSTLAKVELKKLFATKTIKELKEVSLSANQEKSKMKKMTWKVEGDKGQEPQAVRGGSVSTSDFVVELGPMEIRTFLLKF* 725
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g2361 724 Pfam Glycosyl hydrolases family 38 C-terminal domain 316 531 IPR011682 GO:0004559|GO:0006013
Psa4g2361 724 Gene3D - 312 582 - -
Psa4g2361 724 Gene3D Glycoside hydrolase family 38, central domain 112 168 IPR037094 GO:0004559|GO:0006013
Psa4g2361 724 PANTHER ALPHA-MANNOSIDASE 1 724 - -
Psa4g2361 724 Gene3D - 605 724 - -
Psa4g2361 724 Pfam Glycosyl hydrolases family 38 N-terminal domain 1 65 IPR000602 GO:0004559|GO:0006013
Psa4g2361 724 Gene3D Glycoside hydrolase 38, N terminal domain 1 33 IPR027291 -
Psa4g2361 724 Pfam Alpha mannosidase middle domain 70 162 IPR015341 GO:0004559|GO:0006013
Psa4g2361 724 SMART Alpha_mann_mid_2 70 144 IPR015341 GO:0004559|GO:0006013
Psa4g2361 724 Pfam Glycosyl hydrolases family 38 C-terminal beta sandwich domain 616 721 IPR041147 -
Psa4g2361 724 SUPERFAMILY Glycoside hydrolase/deacetylase 1 68 IPR011330 GO:0005975
Psa4g2361 724 Gene3D Glycoside hydrolase family 38, central domain 34 111 IPR037094 GO:0004559|GO:0006013
Psa4g2361 724 SUPERFAMILY Galactose mutarotase-like 171 724 IPR011013 GO:0003824|GO:0005975|GO:0030246
Psa4g2361 724 Gene3D - 180 291 IPR013780 -
Psa4g2361 724 SUPERFAMILY Families 57/38 glycoside transferase middle domain 70 168 IPR028995 -
Psa4g2361 724 PANTHER ALPHA-MANNOSIDASE 1 724 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g2361 Psa-Chr4 190946494 190952438 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g2361 1 724 Glycoside Hydrolase AT5G66150 64.113 0.0 967
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g2361 K01191 - gmx:100775419 1238.02
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa4g2361 4 190946494 190952438 Psa4g2361 4 190946494 190952438 ECH