Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g2306 ATGGGAGAAGGTAGAGAAGGTGATTGGGAGTGTAGCAGTTGCAACAACCGAAACTACGCTTTCCGATCATTCTGCAATCGATGCAAACAGCCACGTCTTCTTGTTGATAACAAAACCCCCGCTGATTCCAAATGGCTCCCTCGTATCGGCGATTGGATCTGCTCCGGTTGCACTAACAACAATTATGCATCAAGAGAGAAGTGCAAGAAGTGTGGACAACCGAAGGAGGTAGCGGCCATGCCAGCAATTGCAATGACTAGAGCATCTTTCCCTGCATATCCACCCTACTTTTCTAGGGCTCCAGGAGGACCAGAACACAACATGAATATTGGATTGATTGGAAACGGTGTGCCACCTCAGGCGCTGAATTTGAATACTAATTGGCCTGTTACTGGAGCAGAAAAGTTTGGTCTCCAGCCCGTTCCACTATGGCTACCAGGTACAAATTATAGTGCTGGACATCCTTATGTAAATTCTAATAGTCAGAACCCATCTGTTCCAAAAGAATGGCGCAGTGGGGACTGGGTCTGTAACTGTGGCTTCCATAATTACTCCTCTCGCTCACAGTGTAAAAAATGCAACGCTTCTCCACCAGCGCCTGGCACAAAACGGTTAGCCTCTGAAGAATTGGTTTATGACTGGGATAACAAGAGATTGAATGTAGGACCTACAAATGACCAGCAGAAAACATATTCAAGTGTAGAGCAAGTAGTAGGGACCAGTGCAGAACCAAAATTGGCACTTGTTCCGGCGTACGCGAGCATTAACTCTAATTCGGCACCAAGCTTTCCAATGCCCCCGCTCTTTCCAATTCCACCTCAATTTTCCTCTACAGCACTCCTTGGAAAAGGAGCTAAGCAATGGCGAAGTGGTGATTGGATGTGCACAAATTGCAACAATCATAATTATGCTTCCAGACTAGAATGTAACAGGTGTAAAACACTCAGAGCGGCGCCCATGCAACCAGTCAATGTTGTGTAA 981 0.4628 MGEGREGDWECSSCNNRNYAFRSFCNRCKQPRLLVDNKTPADSKWLPRIGDWICSGCTNNNYASREKCKKCGQPKEVAAMPAIAMTRASFPAYPPYFSRAPGGPEHNMNIGLIGNGVPPQALNLNTNWPVTGAEKFGLQPVPLWLPGTNYSAGHPYVNSNSQNPSVPKEWRSGDWVCNCGFHNYSSRSQCKKCNASPPAPGTKRLASEELVYDWDNKRLNVGPTNDQQKTYSSVEQVVGTSAEPKLALVPAYASINSNSAPSFPMPPLFPIPPQFSSTALLGKGAKQWRSGDWMCTNCNNHNYASRLECNRCKTLRAAPMQPVNVV* 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g2306 326 SUPERFAMILY Ran binding protein zinc finger-like 5 33 IPR036443 -
Psa4g2306 326 PANTHER ZINC FINGER PROTEIN 168 230 - -
Psa4g2306 326 PANTHER ZINC FINGER PROTEIN 273 325 - -
Psa4g2306 326 PANTHER ZINC FINGER PROTEIN 3 137 - -
Psa4g2306 326 ProSiteProfiles Zinc finger RanBP2 type profile. 5 34 IPR001876 -
Psa4g2306 326 SUPERFAMILY Ran binding protein zinc finger-like 283 317 IPR036443 -
Psa4g2306 326 ProSitePatterns Zinc finger RanBP2-type signature. 293 312 IPR001876 -
Psa4g2306 326 ProSiteProfiles Zinc finger RanBP2 type profile. 48 77 IPR001876 -
Psa4g2306 326 PANTHER OS04G0110600 PROTEIN 3 137 - -
Psa4g2306 326 PANTHER OS04G0110600 PROTEIN 273 325 - -
Psa4g2306 326 PANTHER OS04G0110600 PROTEIN 168 230 - -
Psa4g2306 326 ProSiteProfiles Zinc finger RanBP2 type profile. 171 199 IPR001876 -
Psa4g2306 326 SMART zf_4 291 315 IPR001876 -
Psa4g2306 326 SMART zf_4 7 31 IPR001876 -
Psa4g2306 326 SMART zf_4 50 74 IPR001876 -
Psa4g2306 326 SMART zf_4 173 196 IPR001876 -
Psa4g2306 326 ProSiteProfiles Zinc finger RanBP2 type profile. 289 318 IPR001876 -
Psa4g2306 326 ProSitePatterns Zinc finger RanBP2-type signature. 52 71 IPR001876 -
Psa4g2306 326 SUPERFAMILY Ran binding protein zinc finger-like 168 198 IPR036443 -
Psa4g2306 326 ProSitePatterns Zinc finger RanBP2-type signature. 9 28 IPR001876 -
Psa4g2306 326 Pfam Zn-finger in Ran binding protein and others 48 76 IPR001876 -
Psa4g2306 326 Pfam Zn-finger in Ran binding protein and others 5 32 IPR001876 -
Psa4g2306 326 Pfam Zn-finger in Ran binding protein and others 289 316 IPR001876 -
Psa4g2306 326 Gene3D - 3 33 - -
Psa4g2306 326 Gene3D - 42 77 - -
Psa4g2306 326 Gene3D - 166 200 - -
Psa4g2306 326 Gene3D - 284 319 - -
Psa4g2306 326 SUPERFAMILY Ran binding protein zinc finger-like 42 76 IPR036443 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g2306 - - lja:Lj4g3v1037490.1 561.222
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa4g2306 4 187436973 187440758 Psa4g2306 4 187436973 187440758 ECH