Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g2232 ATGTCGTCATTTTTTTCTTCTATGACCTCTTCCTCGTCGGAGAACACCCTATCCACCGCAAGAACCATCGTATCAACTGCCGCCACCTATGCCGCCGCTGCAGCCGCCTCCGCGATGATAATCCGTTCATTCACCAACGAGTTTTTCCCAATGGAGCTCCGTCACTACATATACACCAGAATCAAAACCGCTTTCTACCGTCTCTCCCCCGACCTAACAATGGTAATCGAAGAATTCGAAGGCCTCGACAACAACCAAATCTACTCCGCCGCCGAAATCTATCTCGGCACCATAGCTTCACCGTCAACAAAAAAACTCCGCGTAAGCAAATCCGATCACCAACAAACCTTCACTCTCACAATGGAACGTGACCAATCCGTAACCGATTACTTCAAAGGCGTTAAACTCAACTGGACTCTCTTCTGCCGCCACGTCGAGAATCTCCACAACAAACGCGATATAACCGCCACTTTGAAATCGGAAGTCCGTTCGTTGGAACTAACATTCCACAGAAAGCACCAAAATCTGGTTCTCACTCAATACATTCCGTTTATTCTTGAAGAAGCAAGATCAAAGAAACAAGAAGCGAAAGCGCTGAGAATCTTCACCGTTGATCACCAGAATCTGTACGGGAATTTGAACGACGCTTGGGTGGGGACCACGTTAGATCATCCATCGACTTTTGACACGCTGGCACTTGACCGTGATTTACGGGAGTTTGTTACGGGGGATTTGGAAAAGTTTGTTAGGAGAAAGGAATATTACAGAAAAGTTGGAAAAGCTTGGAAGAGAGGCTACTTGCTGTATGGTCCACCTGGAACTGGGAAAAGTAGTTTGATTGCTGCTATGGCGAATTACTTGCATTTTGATATTTACGATTTGGAACTTACTGAATTGAATAGTAACGACGAGCTTAGGAGGTTGTTGATTGCTATGCCGAATAAGTCTATTGTTGTTGTTGAGGATATTGATTGTACAGTTGAGTTTCAGGATCGTAATTCAGCACCCTCACCTGCCTCTTGCAGAGTTACTGGGAGAAGTAGGGATCTACAGGTTACACTATCCGGGCTGCTGAATTTTATTGATGGGCTATGGTCAAGTTGTGGAGATGAGAGGATTATAGTGTTCACAACAAACCATAAGGAGAAGCTTGATTTGGCATTGTTGCGCCCGGGTCGAATGGATGTTCATATACACATGTCTTATTGTAGTCCCTATGGTTTTAGACAGTTGGCTTTCAATTACCTTGGTATTAAAGAGCACCCTCTGTTCTATGAGATTGAAGAGAAAATTGAGAAAACGCTTGTGACTCCAGCTGAAATAGCAGAGCAGCTTCTCAAGGGCGTCGAGATTGGAACTGTTCTTGAAGATCTGTTGGTTTTTCTTGCTAAGAAGAAAGAAATTCAGGAACTTGAGGCTAAAAAGAGAGAACGAGATGAGCTGAAAAGTGACAGCGACGATAGTAAAGAAAATGGTGCCATTGCTACCAGATTGTAA 1497 0.4422 MSSFFSSMTSSSSENTLSTARTIVSTAATYAAAAAASAMIIRSFTNEFFPMELRHYIYTRIKTAFYRLSPDLTMVIEEFEGLDNNQIYSAAEIYLGTIASPSTKKLRVSKSDHQQTFTLTMERDQSVTDYFKGVKLNWTLFCRHVENLHNKRDITATLKSEVRSLELTFHRKHQNLVLTQYIPFILEEARSKKQEAKALRIFTVDHQNLYGNLNDAWVGTTLDHPSTFDTLALDRDLREFVTGDLEKFVRRKEYYRKVGKAWKRGYLLYGPPGTGKSSLIAAMANYLHFDIYDLELTELNSNDELRRLLIAMPNKSIVVVEDIDCTVEFQDRNSAPSPASCRVTGRSRDLQVTLSGLLNFIDGLWSSCGDERIIVFTTNHKEKLDLALLRPGRMDVHIHMSYCSPYGFRQLAFNYLGIKEHPLFYEIEEKIEKTLVTPAEIAEQLLKGVEIGTVLEDLLVFLAKKKEIQELEAKKRERDELKSDSDDSKENGAIATRL* 499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g2232 498 Pfam ATPase family associated with various cellular activities (AAA) 267 401 IPR003959 GO:0005524|GO:0016887
Psa4g2232 498 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 125 445 IPR027417 -
Psa4g2232 498 MobiDBLite consensus disorder prediction 473 498 - -
Psa4g2232 498 Coils Coil 464 491 - -
Psa4g2232 498 Gene3D - 218 397 IPR027417 -
Psa4g2232 498 SMART AAA_5 262 404 IPR003593 -
Psa4g2232 498 PANTHER PROTEIN HYPER-SENSITIVITY-RELATED 4-LIKE 15 477 - -
Psa4g2232 498 Pfam Domain associated at C-terminal with AAA 49 141 IPR025753 -
Psa4g2232 498 PANTHER BCS1 AAA-TYPE ATPASE 15 477 - -
Psa4g2232 498 Gene3D - 398 462 - -
Psa4g2232 498 ProSitePatterns AAA-protein family signature. 372 390 IPR003960 GO:0005524|GO:0016887
Psa4g2232 498 CDD AAA 263 402 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g2232 Psa-Chr4 179868783 179871287 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g2232 244 423 Miscellaneous Gene Families AT3G47060 28.723 1.52e-09 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g2232 - K08900 gmx:100788420 622.854
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa4g2232 4 179868783 179871287 Psa4g2232 4 179868783 179871287 ECH