Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g2208 ATGGAGAACTTGGCTTCGCTTGCAGCTTCAACCGCAACATTTCCCACTCACCAATTTCCCTTTCAAATTCAACACTCTTTCTTCAAGCTTGGATTCACCACCAGAACCACCTTCCTTCGAAATCCACATCTATGTTGCCAAACCAGACAATGTCGCTCCAACGCATTTTCCACCAAACAAGAGCTTATCGCACTTCAACAACAACAACAAGAAGATGAAGAAGAACAAACCGCTTCATTTTCAGATGATGATGCATCTTTCTTATCCCTCAGCGAGAAACCCGACCGGAATTTGGGTTTGCTGGATGATTATGAAACTGAAGAACTCGGTTATGATTGCGGTCCTAATCACCGAAGTGGGTATGTGGCTTTACTTGGAAAACCGAATGTTGGGAAGAGTACACTGGCGAACCAAATGGTTGGCCAAAAGTTGTCTATAGTTACGGATAAACCTCAAACAACAAGGCATCGGATTCTTTGTATATGTTCTGGCTCAGATTATCAGATGGTACTATATGATACTCCTGGTGTTTTACAAGAGCAAAGACACAAGTTAGACTCTATGATGATGCAAAATGTTCGCAGCGCTGCAGTTAATGCCGACTGTGTGCTGTTTCTCGTTGATGCATGTAAAGTGCCTGAAAAAATTGATGAAGTGTTAGAAGAAGGCATAGGTAACCCGAAAGATAAACCCCCCACTCTATTGATTATGAACAAGAAGGATCTTATCAAACCTGGTGAAGTTGCAAAGAAACTTGAGTGGTATACAAAATTTACTGACGTTGATGAGGTTATACCAGTTAGTTCCAAGTACGGTCACGGGGTTGAAGATGTCAAGAACTGGATACTATCAAAGCTTCCTAATGGACCAGCTTATTATCCAAAGGACATTATCAGTGAACATCCTGAAAGATTTTTTGTAGCTGAAATCATAAGAGAAAAGATTTTTTTGCAGTATCGAAATGAAATCCCCTATGTGTGTCAGGTGAATGTTCTAAGCTATAAGACCCGACCAAAAGCAAAAGATTTTATACAGGTGGAGATTTTGGTTGAGAGAAACTCCCAGAAGATTATCGTTATCGGAAGAGAAGGAAAAGCTTTAAAACTGCTTGCAACAGCTTCCCGCCTTGACGTTGAAGATTTTCTGCAGAAGAAAGTTTTTCTTGAGATTCAAGTAAAGGTTAAAGAAAATTGGCGACAAGATGAAGGGTTTCTTAAGCACTCTGGTTATGGGGGTCAAATAAGTGTTGTATAA 1254 0.4035 MENLASLAASTATFPTHQFPFQIQHSFFKLGFTTRTTFLRNPHLCCQTRQCRSNAFSTKQELIALQQQQQEDEEEQTASFSDDDASFLSLSEKPDRNLGLLDDYETEELGYDCGPNHRSGYVALLGKPNVGKSTLANQMVGQKLSIVTDKPQTTRHRILCICSGSDYQMVLYDTPGVLQEQRHKLDSMMMQNVRSAAVNADCVLFLVDACKVPEKIDEVLEEGIGNPKDKPPTLLIMNKKDLIKPGEVAKKLEWYTKFTDVDEVIPVSSKYGHGVEDVKNWILSKLPNGPAYYPKDIISEHPERFFVAEIIREKIFLQYRNEIPYVCQVNVLSYKTRPKAKDFIQVEILVERNSQKIIVIGREGKALKLLATASRLDVEDFLQKKVFLEIQVKVKENWRQDEGFLKHSGYGGQISVV* 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g2208 417 CDD Era 117 286 IPR030388 GO:0005525
Psa4g2208 417 Gene3D - 115 297 IPR027417 -
Psa4g2208 417 PANTHER GTPASE ERA-LIKE, CHLOROPLASTIC 71 411 - -
Psa4g2208 417 SUPERFAMILY Prokaryotic type KH domain (KH-domain type II) 295 410 IPR009019 GO:0003723
Psa4g2208 417 ProSiteProfiles Era-type guanine nucleotide-binding (G) domain profile. 118 288 IPR030388 GO:0005525
Psa4g2208 417 Gene3D - 299 414 IPR015946 -
Psa4g2208 417 PANTHER GTPASE ERA 71 411 IPR005662 GO:0003723|GO:0005525
Psa4g2208 417 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 122 320 IPR027417 -
Psa4g2208 417 Pfam 50S ribosome-binding GTPase 122 239 IPR006073 GO:0005525
Psa4g2208 417 TIGRFAM era: GTP-binding protein Era 120 393 IPR005662 GO:0003723|GO:0005525
Psa4g2208 417 TIGRFAM small_GTP: small GTP-binding protein domain 122 278 IPR005225 GO:0005525
Psa4g2208 417 Pfam KH domain 322 399 IPR004044 GO:0003723
Psa4g2208 417 ProSiteProfiles Type-2 KH domain profile. 319 396 IPR004044 GO:0003723
Psa4g2208 417 Hamap GTPase Era [era]. 117 410 IPR005662 GO:0003723|GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g2208 Psa-Chr4 178135146 178138836 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g2208 K03595 - gmx:100815820 613.609
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa4g2208 4 178135146 178138836 Psa4g2208 4 178135146 178138836 ECH