Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g2200 ATGGCTTCTTGTATATCCACTCCCTCGCCTTCTTCCCGATTACATCTCACTAAAACAACCTTCATTGCCGCAACTTCACTCCCTCTCTATCACAGTACTAAATGTGAAATGAACAGAAGGAGTTTAGCTGTTAAAGGAATTGTCACAACTGGAGTTTCAGCCATGGCTATGGCTTCCACTCTTACTCCTCAAGCTCAACCATCTCAAGACAAGGGACTTGAAAGACTAGCATACAAACCTGAAGGTTATAATTATTGGAAGTGGAAGGATCATAACATTCACTATGTTGTGCAAGGAGAAGGACCTCCTCTTGTTCTTATTCATGGTTTTGGTGCATCGGCTTTTCATTGGAGATACAATATCCCAGAATTGGCTAAGAAACACAAGGTTTATGCCTTAGACTTGCTTGGATTTGGATGGAGTGACAAAGCACTCGTCGACTATGATGCCATGGTATGGAGGGATCAAGTCACGGACTTCTTGAAGGAAATCGTAAAAGAACCAGCAGTTTTGGTTGGAAACAGCCTTGGAGGATTTACTGCTTTGATTGCAGCAACCGGGTTGCCTGAGTTTGTCAACGGGGTCGCGCTACTGAATTCTGCAGGACAATTTGGTGATGGAAATAAGGAAAGTAAAAATTCCGAGGAATCACCTCTACAAAAGTTTTTCCTAAAACCTTTGAAGGAAGTTTTCCAGCGTGTAGTTCTCGGATTTATATTCTGGCAATCGAAACAACCTGCTCGAATTAAATCAGTCTTAAAAAGTGTGTATGTAAACTCTTCCAATGTGGATGATTATCTTGTGGAATCTATAACAAGGCCAGCTCAAGACCCCAACGCCGGAGAAGTTTATTATAGGTTAATGACACGTTTCATGATGAATCAGAGCAAGTACACTCTAGATTCCGTGTTAAGCGAACTCTCTTGCCCGTTGCTTCTGCTATGGGGTGACCTTGATCCATGGGTTGGTCCAGCCAAAGCTAATAAAATCAAAGAGTTTTATCCAAAAACAACTCTTGTTCACTTGCAAGCCGGGCATTGTCCACACGACGAGACACCCGAGCTCGTGAACACAGCTTTATTGGACTGGCTCACCACCCTTACTCCTCAAGTCTCTCTCCAAACAGTTTGA 1131 0.4297 MASCISTPSPSSRLHLTKTTFIAATSLPLYHSTKCEMNRRSLAVKGIVTTGVSAMAMASTLTPQAQPSQDKGLERLAYKPEGYNYWKWKDHNIHYVVQGEGPPLVLIHGFGASAFHWRYNIPELAKKHKVYALDLLGFGWSDKALVDYDAMVWRDQVTDFLKEIVKEPAVLVGNSLGGFTALIAATGLPEFVNGVALLNSAGQFGDGNKESKNSEESPLQKFFLKPLKEVFQRVVLGFIFWQSKQPARIKSVLKSVYVNSSNVDDYLVESITRPAQDPNAGEVYYRLMTRFMMNQSKYTLDSVLSELSCPLLLLWGDLDPWVGPAKANKIKEFYPKTTLVHLQAGHCPHDETPELVNTALLDWLTTLTPQVSLQTV* 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g2200 376 SUPERFAMILY alpha/beta-Hydrolases 84 364 IPR029058 -
Psa4g2200 376 Pfam Alpha/beta hydrolase family 104 357 IPR000073 -
Psa4g2200 376 Gene3D alpha/beta hydrolase 80 367 IPR029058 -
Psa4g2200 376 PANTHER PHEOPHYTINASE, CHLOROPLASTIC-LIKE ISOFORM X1 30 367 - -
Psa4g2200 376 PRINTS Alpha/beta hydrolase fold signature 127 142 IPR000073 -
Psa4g2200 376 PRINTS Alpha/beta hydrolase fold signature 171 184 IPR000073 -
Psa4g2200 376 PRINTS Alpha/beta hydrolase fold signature 185 198 IPR000073 -
Psa4g2200 376 PANTHER ALPHA/BETA-HYDROLASES SUPERFAMILY PROTEIN 30 367 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g2200 Psa-Chr4 177713226 177715854 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g2200 103 354 Acyl Lipid Metabolism Gene Families AT3G10840 24.671 6.93e-14 70.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g2200 - - gmx:100776976 616.305
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa4g2200 4 177713226 177715854 Psa4g2200 4 177713226 177715854 ECH