Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g2156 ATGGTGCACAGTGCCTACGATTCCTTCGAACTCCTCACCGGTTGTCCATCCAAAATCGAATCTGTCGAATCGTACGGTTCCAAGATCCTCTTAGGGTGCGCCGATGGCTCTCTCCTCGTTTACGCTCCGGAATCGACTCGTTCAGCGACGGTGCCGGAGATGCGGAAGGAGTCATATGCACTGGAAACAAACCTAAAAGGATTCGCGAAGAAGGCTGTGGTGTCAATGCAGGTGGCGGAATCGAGGGAGCTTCTTCTCTCGCTCTCGGAATCCATCGCGTTTCATAAGCTTTCTACGTTTGAAATCATTGCTGTCATCACCAAGGCTAAAGGCGCTAATGCGTTTTGCTGGGATGAACATAGAGGCTTCTTGTGCTTCGCTAGGCAGAAGCGAGTCTGTATCTTTAGACACGACGGTGGTAGAGGATTTGTGGAGGTGAAAGACTTTGGTGTTCCTGATGTGGTGAAGTCAATGAGTTGGTGTGGTGATAACATATGTTTGGGAATTAGGAAAGAGTATGTGATTCTTAATGCTACAAGTGGTGCAATATCTGAAGTTTTTACTTCTGGGAGGCTAGCACCACCTTTGGTGGTATCTCTTCCTTCTGGAGAGCTCCTTCTAGGCAAGGAGAATATTGGCGTCATTGTGGATCAAAACGGAAAACTTCGCCCAGAAGGTAGGATTTGTTGGTCAGAGGCCCCCACAGAAGTTGTAATTCAGAAGCCATATGCTTTAGCTCTGCTGCCAAGATTTGTGGAGATTCGATCTCTCCGAGCTCCATATCCATTGATACAAACAGTAGTTTTTCGAAATGTACGTCATCTTCGCCAGAGCAATAATTCAGTGATTATTGCTTTAGAAAACTCTGTTCATGGCCTCTTTCCTGTTCCTCTTGGAGCCCAGATTGTCCAATTAACAGCCGCTGGTAACTTCGAAGAAGCTTTGTCATTGTGCAAGCTCCTTCCACCTGAAGAATCAAATCTTCGTGCTGCAAAGGAGGGTTCAATTCATATAAGATATGCCCACTATCTTTTTGACAACGGAAGCTATGAGGAGTCAATGGAACATTTTCTTGCATCTCAAGTAGATATAACTCATGTGCTTTCTCTGTATTCATCCATTATCCTTCCAAAGACAACAATTGTTCATGAAGCAGATAAGTTGGATTTTGGAGATGATTTGCATCTCTCGAGGGGTTCTTCGCCTGTGTCTGATGATATGGAACCCTCAACAGCATCCAATATGTCAGAATTAGATGACAGTGCAGAACTTGAATCGAAAAAAATGAGTCATAATATGCTTATGGCTCTGATAAAATTTTTGCAGAAGAAGAGACATAGCATTATTGAGAAAGCCACTGCAGAAGGAACTGAGGAAGTTGTATTTGATGCAGTGGGTAATAACTTTGAATCCTATAACAGTAGTAGGTTTAAGAAAATAAACAAGGGGCGTGGTAGTATACCTGTTAGTTCAGGAGCTCGGGAGATGGCTTCAGTATTAGATACTGCTCTACTCCAAGCATTGCTTTTAACTGGACAGCCTTCTATGGCTGAAAATTTGTTGAGAGGTCTTAACTACTGTGATTTGAAAATATGTGAAGAGATACTTCAAGAAGGAAGCTATCATGTTGCTTTAGTAGAACTTTACAAGTGCAACTCCAAGCACCGGGAAGCCCTTGAACTTATTAATAAATTGGCGAAAGAGTCAAAGGCTAGCCAGTCTAACATTGCTCATAGATTCAAGCCGGAGGCCATCATCGAATACCTCAAGCCACTTTGTGTAACAGACCCAACACTTGTTCTAGAGTACTCTATGCTTGTTCTTGAAAGCTGCCCAACCCAAACAATTGAACTCTTTTTGTCTGGAAATATTCCAGCAGATATGGTGAACTTATATTTAAAGCAAAATGCTCCAAACTTGCAATCCACGTATTTGGAGCTCGTGCTTGCAATGAATGAGGACGCCGTATCTGGAACTTTGCAAAATGAAATGGTACAAATCTATCTTTCTGAAGTACTTGATTGGCATGGTGATTTAAGTTCTCAACAGCAATGGGATGAAAAAGTTTATTCCCTGAAAAGGAAAAAATTATTGTCTGCCTTGGAGAGTATATCAGGATATAATCCAGAGACTCTGCTGAAACTTCTTCCGTCAGATGCTTTATACGAAGAGCGGGCTATATTGTTGGGAAAAATGAATCAACATGAACTAGCACTTTCTTTGTATGTTCATAAGCTTCATGTTCCAGAACTGGCATTGTCGTATTGTGATCATGTGTATGAATCTACTCATAAGGCTTCTGGAAAATCTACTAGCAACATATACCTAATGCTTCTGCAAATCTATTTGAACCCACGGACGACAACCAAGAACTACGAAAACAAAATTTCAAAAATATTATCCCCCCGAAGTAAATCCCTTCGAAAGGTTAGATCAAGATCATTCTCAAAATCCAGAAGCCTAGGATCAAAGAAAATTGCAGCAATAGAGATTGCAGAGGATACAAAAGCTAGTCAGAGTAGCGACAGTGGTAGGAGTGATGTTGAAACAGATGAATTTATTGAGGAAGGAGATATTTCTATTATGCTTGATGAGGCCCTCGATTTGTTAAGCCGCAGGTGGGATAGAATCAACGGAGCCCAGGCCCTTAAACTCCTACCAAAAGAGACCAAACTGCAGAACTTGCTTCCATTTCTTGGACCCCTTGTGAGAAAATCTAGTGAAATGTATCGTAATTGCTCAGTTGTTAGGAGCTTGAGACAGAGTGAGAACCTACAGGTGAAAGATGAACTCTACAATAAGAGAAAAGCAGTTATGAAGATTAGCGGTGATAACATGTGTTCCTTGTGCAATAAGAAAATAGGGACTAGTGTTTTTGCGGTGTATCCGAATGGGAAAACTCTAGTGCATTTTGTTTGTTTCAGAGACTCTCAAAGTATGAAAGCTGTGGCCCAAGGGACTCCATTCAAAAAACCATTTTGA 2982 0.4175 MVHSAYDSFELLTGCPSKIESVESYGSKILLGCADGSLLVYAPESTRSATVPEMRKESYALETNLKGFAKKAVVSMQVAESRELLLSLSESIAFHKLSTFEIIAVITKAKGANAFCWDEHRGFLCFARQKRVCIFRHDGGRGFVEVKDFGVPDVVKSMSWCGDNICLGIRKEYVILNATSGAISEVFTSGRLAPPLVVSLPSGELLLGKENIGVIVDQNGKLRPEGRICWSEAPTEVVIQKPYALALLPRFVEIRSLRAPYPLIQTVVFRNVRHLRQSNNSVIIALENSVHGLFPVPLGAQIVQLTAAGNFEEALSLCKLLPPEESNLRAAKEGSIHIRYAHYLFDNGSYEESMEHFLASQVDITHVLSLYSSIILPKTTIVHEADKLDFGDDLHLSRGSSPVSDDMEPSTASNMSELDDSAELESKKMSHNMLMALIKFLQKKRHSIIEKATAEGTEEVVFDAVGNNFESYNSSRFKKINKGRGSIPVSSGAREMASVLDTALLQALLLTGQPSMAENLLRGLNYCDLKICEEILQEGSYHVALVELYKCNSKHREALELINKLAKESKASQSNIAHRFKPEAIIEYLKPLCVTDPTLVLEYSMLVLESCPTQTIELFLSGNIPADMVNLYLKQNAPNLQSTYLELVLAMNEDAVSGTLQNEMVQIYLSEVLDWHGDLSSQQQWDEKVYSLKRKKLLSALESISGYNPETLLKLLPSDALYEERAILLGKMNQHELALSLYVHKLHVPELALSYCDHVYESTHKASGKSTSNIYLMLLQIYLNPRTTTKNYENKISKILSPRSKSLRKVRSRSFSKSRSLGSKKIAAIEIAEDTKASQSSDSGRSDVETDEFIEEGDISIMLDEALDLLSRRWDRINGAQALKLLPKETKLQNLLPFLGPLVRKSSEMYRNCSVVRSLRQSENLQVKDELYNKRKAVMKISGDNMCSLCNKKIGTSVFAVYPNGKTLVHFVCFRDSQSMKAVAQGTPFKKPF* 994
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g2156 993 MobiDBLite consensus disorder prediction 399 423 - -
Psa4g2156 993 Pfam CNH domain 26 275 IPR001180 -
Psa4g2156 993 PANTHER CNH DOMAIN CONTAINING 1 991 IPR032914 GO:0016192
Psa4g2156 993 ProSiteProfiles Citron homology (CNH) domain profile. 16 282 IPR001180 -
Psa4g2156 993 PANTHER VACUOLAR SORTING PROTEIN 39 1 991 - -
Psa4g2156 993 Pfam Vacuolar sorting protein 39 domain 2 867 975 IPR019453 -
Psa4g2156 993 MobiDBLite consensus disorder prediction 403 419 - -
Psa4g2156 993 Pfam Vacuolar sorting protein 39 domain 1 500 608 IPR019452 -
Psa4g2156 993 Pfam Region in Clathrin and VPS 628 759 IPR000547 GO:0006886|GO:0016192
Psa4g2156 993 SUPERFAMILY WD40 repeat-like 11 205 IPR036322 GO:0005515
Psa4g2156 993 ProSiteProfiles Clathrin heavy-chain (CHCR) repeat profile. 603 787 IPR000547 GO:0006886|GO:0016192
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g2156 Psa-Chr4 174934164 174942353 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g2156 K20183 - gmx:100805342 1489.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa4g2156 4 174934164 174942353 Psa4g2156 4 174934164 174942353 ECH