Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g2147 ATGGGAGACTTCAACAACGATCCTCTCATGCGCAACCAAAACGCCGCCGTTCAAGCTCGTACCAAAGCCCAGAATCGCGCCAACGTCCTTCAACTCAAGCTGATTGGACAGAGTCATCCAACTGGTCTCACCGCAAATTTGCTGAAGCTGTTTGAGCCTAGGCCTCCACTGGAATACAAACCTCCTCCGGAGAAAAGAAAATGTCCTCCTTTAACAGGGATGGCACAATTTGTCACCAAGTTTGCTGAGCCTGGTGAACCAGAATATTCTCCGCCTGTTCCAGTGGTTGAAACTCCTGCAGAAAGAAGGGCCAGAGTGCACAAGTTAAGACTTGAGAAAGGAGCCGTGAAAGCTGCTGAGGAGCTTGAGAAATATGATCCACAAAACGATCCAAATATATCGGGAGACCCATACAAGACTTTATTTGTGGCCAGACTTAGTTATGAGACTACAGAGAGCAGAATCAAAAGGGAGTTTGAGTCATATGGTGCAATCAAACGGGTTCGACTGGTTACTGATACTGAGTCAAATAAGCCCAGGGGTTATGCATTCATTGAGTACCTGCACACAAGAGACATGAAAGCTGCTTATAAACAAGCTGATGGTAGGAAAATTGAGGGTAGAAGGGTGCTTGTGGATGTTGAACGTGGGAGGACTGTTCCAAATTGGCGACCCCGCCGCCTAGGTGGTGGGCTAGGTACTACTAGAGTGGGGGGCGAAGAAGTTAATCAGCGACATTCGGGGAGGGAGCAACAGCAGTCAGGACCTTCTCGTTCTGAAGAACCCAGAGCGCGAGAGGATCGACATGTTGATCGGGACAGAGAAAAGTCACGTGAAAGAGGTAAGGACAGAGAACGTGAGCGATCACGTGAACGATCTAGCGATAAGGCTAGGGATCGTGATCATAGAGAGGACAGGCACCACAGAGACAGGGACCGGGATAGGAATAGGGACAGAGACAGAGGTAAGGAAAGGGAAAGGGAAAGAGATCGTGGACGTGATCGAGAGAGAGGACGTGACCGTGATCGTGGCCGGGAACGTGACCGTGATCGTGAGAGGGATCATGATCGAGACGTAGAACATGATCGTTATCGCGAAAAAGACAAGGATTATGAAGTTGGGGAAACTGAGCGGGGACGGTCCCATGATAGGGGAACTGATTATGATCTTGTTGAATCTAAACATGAGAAGGAACCTCATGGTGAAAGAGAGCGAGGCTATGATGATCATCGTGGGCGGTACAATCAACCTGGGCATGGGCACAGGCATGCAGATCCTGAAAATGATCCTGATCAGTATGACCATTATGAGCATCATAGAGGACGGGTGCAGTACGATGAAGGAGATGACCATGGTGATTACAATCAACATCTTGATCCTGCTAAGATTGAAGATGACCATCCCACTGAACGTGCAAAATCTAAATCACGTGATAGGGACAGAAACCGTGATACGGACCGTGATTATCATCGCTCAGAGAGGTCCCATTCTCGAGAATATGATTACTAG 1509 0.4851 MGDFNNDPLMRNQNAAVQARTKAQNRANVLQLKLIGQSHPTGLTANLLKLFEPRPPLEYKPPPEKRKCPPLTGMAQFVTKFAEPGEPEYSPPVPVVETPAERRARVHKLRLEKGAVKAAEELEKYDPQNDPNISGDPYKTLFVARLSYETTESRIKREFESYGAIKRVRLVTDTESNKPRGYAFIEYLHTRDMKAAYKQADGRKIEGRRVLVDVERGRTVPNWRPRRLGGGLGTTRVGGEEVNQRHSGREQQQSGPSRSEEPRAREDRHVDRDREKSRERGKDRERERSRERSSDKARDRDHREDRHHRDRDRDRNRDRDRGKERERERDRGRDRERGRDRDRGRERDRDRERDHDRDVEHDRYREKDKDYEVGETERGRSHDRGTDYDLVESKHEKEPHGERERGYDDHRGRYNQPGHGHRHADPENDPDQYDHYEHHRGRVQYDEGDDHGDYNQHLDPAKIEDDHPTERAKSKSRDRDRNRDTDRDYHRSERSHSREYDY* 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g2147 502 PANTHER - 1 364 - -
Psa4g2147 502 MobiDBLite consensus disorder prediction 222 502 - -
Psa4g2147 502 Gene3D - 126 251 IPR012677 -
Psa4g2147 502 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 141 210 IPR000504 GO:0003723
Psa4g2147 502 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 139 217 IPR000504 GO:0003723
Psa4g2147 502 CDD RRM_snRNP70 138 228 IPR034143 GO:0030619
Psa4g2147 502 PANTHER U1 SMALL NUCLEAR RIBONUCLEOPROTEIN 70 KD 1 364 - -
Psa4g2147 502 SUPERFAMILY RNA-binding domain, RBD 127 239 IPR035979 GO:0003676
Psa4g2147 502 SMART rrm1_1 140 213 IPR000504 GO:0003723
Psa4g2147 502 Pfam U1 small nuclear ribonucleoprotein of 70kDa MW N terminal 42 130 IPR022023 -
Psa4g2147 502 MobiDBLite consensus disorder prediction 259 502 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g2147 Psa-Chr4 173121830 173128200 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g2147 K11093 - gmx:100800903 445.662
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa4g2147 4 173121830 173128200 Psa4g2147 4 173121830 173128200 ECH