Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g2121 ATGAAGTTCCAATTTGCATTATTCTTATTCTTATGTGTTAGTGTTATTCTTTTCTTTTCCAATCACACCTTATGCATTACCACTGAAGAAGGTTTCAAAGAAGCACCAAAGTTCTACAACTCCCCAACATGCAAAACCATTATATTCCATACTAACGAACAATGCTCAATCGAAGCCGTACACGTGGCAATGACACTTGACGTGTCCTACATCCGCGGCTCCATGGCAGCGATCCTCTCCGTACTCCAACACTCCTCATGTCCAGAAAACATCGTCTTCCATTTCATTACCTCCGCTTCAAAACGTTCCTCCACAACCGTTCTCAACAGAATCATAACTAACTCATTCCCATATTTAAAATACCAAATCTACCCTTTCAACGACGAGCCCGTCGCCGGATTGATTTCAACCTCCATCCGCTCCGCCTTGGACTGTCCCCTCAACTACGCTCGAACCTACCTCGCTGACCTCCTACCGTTTTGTATCACCAGAGTCGTTTACCTTGACTCCGACTTAATCCTCGTCGACGACATTGCGAAACTCGCGGCTACTCCTCTCCGGTCAAACACCGTCATCGCTGCACCGGAATACTGCGGCGCGAATTTCATTTTTGCGGGGAGGATTACGCCGGTGGATCATCGGTGGAACCAGCACGGGCTTGGTGGTGATAACTTTCGTGGGCTTTGTCGGGACCTGCACCCGGGCCCGGTGAGTTTGTTGCATTGGAGTGGAAAGGGAAAACCGTGGGCCAGGCTTGATGCTAATAGGCCTTGTCCTTTGGATGCTTTGTGGGCCCCTTATGATTTGCTCAAAACTCGTTTTGCTCTCGAGTCATAG 837 0.4851 MKFQFALFLFLCVSVILFFSNHTLCITTEEGFKEAPKFYNSPTCKTIIFHTNEQCSIEAVHVAMTLDVSYIRGSMAAILSVLQHSSCPENIVFHFITSASKRSSTTVLNRIITNSFPYLKYQIYPFNDEPVAGLISTSIRSALDCPLNYARTYLADLLPFCITRVVYLDSDLILVDDIAKLAATPLRSNTVIAAPEYCGANFIFAGRITPVDHRWNQHGLGGDNFRGLCRDLHPGPVSLLHWSGKGKPWARLDANRPCPLDALWAPYDLLKTRFALES* 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g2121 278 Pfam Glycosyl transferase family 8 61 197 IPR002495 GO:0016757
Psa4g2121 278 Pfam Glycosyl transferase family 8 200 251 IPR002495 GO:0016757
Psa4g2121 278 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 202 258 IPR029044 -
Psa4g2121 278 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 61 201 IPR029044 -
Psa4g2121 278 SUPERFAMILY Nucleotide-diphospho-sugar transferases 60 270 IPR029044 -
Psa4g2121 278 PANTHER HEXOSYLTRANSFERASE 203 277 - -
Psa4g2121 278 PANTHER HEXOSYLTRANSFERASE 8 202 - -
Psa4g2121 278 PANTHER GLYCOSYLTRANSFERASE 8 DOMAIN-CONTAINING PROTEIN 8 202 - -
Psa4g2121 278 PANTHER GLYCOSYLTRANSFERASE 8 DOMAIN-CONTAINING PROTEIN 203 277 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g2121 Psa-Chr4 168145001 168146047 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g2121 202 276 Glycosyltransferase AT3G50760 85.333 2.20e-45 154
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g2121 K20893 - sspl:121761928 347.821
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa4g2121 4 168145001 168146047 Psa4g2121 4 168145001 168146047 ECH