Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g2120 ATGGCTAGAATCCTAAAACCATCTAAGTGGTTCTCTAACAAAGGTCTTAAACTTAGGTCAAGATCTTCCAATTCATCATCATCATTATGCTCGCCAAAAAATAACAAGAATGAAGATGATATGGGATTAAGAGAGGTTTTCAATTACTTTGATAGTGATGGAGATGGAAAAATTTCAGCCTATGAATTAAGGTCATATTTTGGGTCAATTGGAGAGCACATGTCTCATGAAGAAGCTGAAAGGGTGATTCAATATCTCGATGCCGACGGCGACAGCTTGTTAGACTTCAATGATTTCATTAAGTTGATGAAAGGTGAAGAAGGAAGTTGTGATGATAAAGATCTTAGAAAGGCTTTTGAAATGTTTGTGTGGGAAGAGAAAGAAGATTGTATTACACCAAAAGGGTTGCAAAGAATGTTGCAACGTCTTGGAGATGAAAGGTCTTATGAAGAGTGTGTGGTTATGATTGATGCATTTGATGTTGATCATAATGGAGTTCTTGATTTCAATGAGTTTCATCAAATGATGGCTTAG 534 0.3614 MARILKPSKWFSNKGLKLRSRSSNSSSSLCSPKNNKNEDDMGLREVFNYFDSDGDGKISAYELRSYFGSIGEHMSHEEAERVIQYLDADGDSLLDFNDFIKLMKGEEGSCDDKDLRKAFEMFVWEEKEDCITPKGLQRMLQRLGDERSYEECVVMIDAFDVDHNGVLDFNEFHQMMA* 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g2120 177 Gene3D - 111 177 - -
Psa4g2120 177 SUPERFAMILY EF-hand 34 176 IPR011992 -
Psa4g2120 177 Pfam EF-hand domain pair 129 176 IPR002048 GO:0005509
Psa4g2120 177 ProSiteProfiles EF-hand calcium-binding domain profile. 38 73 IPR002048 GO:0005509
Psa4g2120 177 MobiDBLite consensus disorder prediction 16 35 - -
Psa4g2120 177 Pfam EF-hand domain pair 43 104 IPR002048 GO:0005509
Psa4g2120 177 Gene3D - 13 110 - -
Psa4g2120 177 ProSitePatterns EF-hand calcium-binding domain. 160 172 IPR018247 -
Psa4g2120 177 ProSiteProfiles EF-hand calcium-binding domain profile. 147 177 IPR002048 GO:0005509
Psa4g2120 177 PANTHER CALCIUM BINDING PROTEIN 23 177 - -
Psa4g2120 177 ProSitePatterns EF-hand calcium-binding domain. 51 63 IPR018247 -
Psa4g2120 177 CDD EFh 43 104 IPR002048 GO:0005509
Psa4g2120 177 PANTHER CALCIUM-BINDING PROTEIN CML41-RELATED 23 177 - -
Psa4g2120 177 SMART efh_1 78 106 IPR002048 GO:0005509
Psa4g2120 177 SMART efh_1 151 177 IPR002048 GO:0005509
Psa4g2120 177 SMART efh_1 42 70 IPR002048 GO:0005509
Psa4g2120 177 ProSiteProfiles EF-hand calcium-binding domain profile. 74 109 IPR002048 GO:0005509
Psa4g2120 177 MobiDBLite consensus disorder prediction 16 36 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g2120 Psa-Chr4 168054220 168055996 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g2120 6 177 EF-hand Containing Proteins AT3G50770 50.505 5.74e-59 181
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g2120 K13448 - gmx:100306370 234.187
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa4g2120 4 168054220 168055996 Psa4g2120 4 168054220 168055996 ECH