Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g1812 ATGGCCGAATCGGTCGAGCTTCCGAGTCGCTTGGCGATCCTTCCTTTCAGAAACAAGGTCCTCTTACCTGGTGCTATCATCAGAATCCGTTGCACTTCCCCTAGCAGTGTGAAGTTGGTGGAACAAGAACTTTGGCAGAAAGAAGAGAAGGGGTTGATTGGAATCCTGCCTGTACGCGATGCTCTTGAAATTAAGTCAGCGGGTCCCACAGCATCTCAAGGTGCAGGAGCCAATATTATAGAGCAAAGTTCAAAACTTCAGGACGGTTCATCAGATTCTCTCAAGCCTGATACCAAAAAGCAGAATGACGTTGTTCATTGGCACAACAGGGGGGTTGCTGCCCGACCATTACATTTATCAAGGGGAGTGGAGAAACCAAGTGGAAGGGTCACATATACCGTTGTTCTTGAAGGTTTGTGTAGATTTAGTGTCCTGGAACTAAGCACAAGAGGAATATACCAGACTGCAAAGATATCTTCCCTTGAGATGACTATGACTGAGATGGAACAAATAGAGCAAGACCCAGATTACATAATGTTGTCTCGCCAATTCAAAGCAACAGCAACGGAGCTTATTTCTGTTCTGGAGCTGAAACAAAAAACCGGTGGAAGAACCAAAGTCCTTTTGGACAACGTTCCTGTTCACAAGTTAGCTGATATATTTGTTGCAAGTTTTGAGATAAGTTTTGAAGAACAACTATCTATGTTGGATTCAGTTGGCCCTAAATTAAGGCTTTCAAAAGCAACTGAGTTAGTTGATAGGCATTTACAGTCAATACGTGTAGCTGAGAAAATTACACAGAAGGTTGAAGGTCAATTGTCAAAATCTCAAAAAGAGTTTCTTCTGCGTCAGCAGATGAGGGCTATAAAAGAAGAACTTGGTGACAACGAGGATGATGAGGATGACTTGGTTGCGCTTGAAAGAAAGATGCAGAGTGCAGGAATGCCACCAAATGTATGGAAACTTGCACACAGAGAGTTGAGGAGGCTTAAAAAAATGCAGCCTCAGCAACCTGGGTACAACAGTTCGCGGGTTTACCTAGATCTTCTTGCTGATCTGCCCTGGCAGAAGGCCAGTGAAGAGAATGAACTAGACTTAAGAGCTGCACAAAAGCGACTGGACAGTGATCACTATGGTTTAGTGAAGGTCAAGCAACGGATTATTGAATACCTGGCAGTTCGCAAGCTTAAACCAGATGCAAGGGGTCCAGTATTGTGCTTTGTTGGACCACCAGGTGTTGGGAAAACATCACTGGCATCTTCTATTGCTGCTGCTTTGGGCAGAAAGTTTATTCGCATATCCCTTGGTGGAGTCAAGGATGAGGCTGATATTAGAGGACATAGGAGAACATACATTGGAAGCATGCCTGGGCGGCTTATAGATGGATTAAAGAAAGTAGCTGTTTGCAATCCTGTTATGTTGCTTGATGAAGTTGACAAGACAGGTTCTGATGTTCGTGGAGATCCAGCTTCAGCATTGCTAGAAGTTCTTGATCCAGAACAAAATAAAACATTTAATGATCACTATTTGAATGTTCCATTTGATCTGTCCAAGGTAATTTTTGTGGCTACAGCAAATAGGATGCAGCCTATTCCTCCACCACTACTGGATAGGATGGAAGTGATTGAACTTCCTGGATATACACCTGAGGAAAAGCTCCAAATAGCCATGCGGCATTTGATTCCAAGAGTTTTGGACCAACATGGGTTGAGTTCTGAGTTTATTCAGATTCCAGAGGCAATGGTGAAACTTGTCATTCAGAGGTATACCAGGGAAGCTGGTGTGAGGAATTTGGAGAGGAATCTTGCTGCACTGGCTCGTGCTGCTGCAGTAAGGGTTGTAGAGCAAGAACAGGTGGTTCCATTAAACAAAGGGATACAAGGACTTTCTACCCCACTTCTGGAAAGTAGACTCGCTGATGGAACTGAAGTTGAAATGGATGTGATACCAATGAGCGTAAATAGTCGGGACATCTCAAACACATTCAGGATTCCCTCTCCGTTAGTTGTTGATGAAACCATGCTTGAAAAAGTTCTCGGGCCTCCAAGATTTGATGATAGAGAAGCTGCAGAACGCGTGGCTGCCCCTGGGGTCTCTGTTGGGCTGGTTTGGACTGCTTTTGGTGGAGAGGTTCAGTTTGTGGAGGCTTCAGCAATGGTAGGGAAGGGTGAACTGCATCTCACTGGACAACTTGGTGATGTAATCAAAGAATCAGCTCAGATTGCACTAACATGGGTAAGAGCAAGGGCAGCTGATTTTAGGCTTGCTGCTGAAGAGGGATTTAATCTTTTGGAGGGCCGTGATGTACATATTCATTTTCCTGCGGGTGCTGTTCCTAAAGATGGCCCCTCGGCAGGTGTGACTTTAGTCACGTCATTGGTATCCCTTTTCACTCAGAAAAGCGTGAGGTCAGATACAGCTATGACTGGAGAGATGACTTTGAGAGGATTAGTTCTACCTGTTGGAGGTGTCAAGGACAAGATATTAGCTGCCCATCGTTATGGTATCAAGAGAGTTATCTTGCCTGAAAGGAACCTCAAAGACTTGGTTGAAATACCATCAACAGTACTGGCCAATTTGGAGATACTGCCAGCAAAACGAATGGAAGATGTGTTAGAGCATGCTTTTGATGGAGGGTGCCCATGGAGACAACACTCTAAGTTATAG 2667 0.4447 MAESVELPSRLAILPFRNKVLLPGAIIRIRCTSPSSVKLVEQELWQKEEKGLIGILPVRDALEIKSAGPTASQGAGANIIEQSSKLQDGSSDSLKPDTKKQNDVVHWHNRGVAARPLHLSRGVEKPSGRVTYTVVLEGLCRFSVLELSTRGIYQTAKISSLEMTMTEMEQIEQDPDYIMLSRQFKATATELISVLELKQKTGGRTKVLLDNVPVHKLADIFVASFEISFEEQLSMLDSVGPKLRLSKATELVDRHLQSIRVAEKITQKVEGQLSKSQKEFLLRQQMRAIKEELGDNEDDEDDLVALERKMQSAGMPPNVWKLAHRELRRLKKMQPQQPGYNSSRVYLDLLADLPWQKASEENELDLRAAQKRLDSDHYGLVKVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIAAALGRKFIRISLGGVKDEADIRGHRRTYIGSMPGRLIDGLKKVAVCNPVMLLDEVDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANRMQPIPPPLLDRMEVIELPGYTPEEKLQIAMRHLIPRVLDQHGLSSEFIQIPEAMVKLVIQRYTREAGVRNLERNLAALARAAAVRVVEQEQVVPLNKGIQGLSTPLLESRLADGTEVEMDVIPMSVNSRDISNTFRIPSPLVVDETMLEKVLGPPRFDDREAAERVAAPGVSVGLVWTAFGGEVQFVEASAMVGKGELHLTGQLGDVIKESAQIALTWVRARAADFRLAAEEGFNLLEGRDVHIHFPAGAVPKDGPSAGVTLVTSLVSLFTQKSVRSDTAMTGEMTLRGLVLPVGGVKDKILAAHRYGIKRVILPERNLKDLVEIPSTVLANLEILPAKRMEDVLEHAFDGGCPWRQHSKL* 889
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g1812 888 ProSitePatterns ATP-dependent serine proteases, lon family, serine active site. 781 789 IPR008268 GO:0004176|GO:0004252|GO:0006508
Psa4g1812 888 Gene3D - 305 353 - -
Psa4g1812 888 PIRSF Lon_proteas 1 627 IPR004815 GO:0004176|GO:0005524|GO:0006508
Psa4g1812 888 PIRSF Lon_proteas 656 879 IPR004815 GO:0004176|GO:0005524|GO:0006508
Psa4g1812 888 SUPERFAMILY Ribosomal protein S5 domain 2-like 696 876 IPR020568 -
Psa4g1812 888 Hamap Lon protease homolog 2, peroxisomal [LONP2]. 3 888 IPR027501 GO:0004252|GO:0006515
Psa4g1812 888 PANTHER LON PROTEASE HOMOLOG 2, PEROXISOMAL 1 888 - -
Psa4g1812 888 Coils Coil 289 309 - -
Psa4g1812 888 ProSiteProfiles Lon proteolytic domain profile. 693 878 IPR008269 GO:0004176|GO:0004252|GO:0006508
Psa4g1812 888 SMART lon_5 10 254 IPR003111 -
Psa4g1812 888 SUPERFAMILY PUA domain-like 10 253 IPR015947 -
Psa4g1812 888 SMART AAA_5 401 546 IPR003593 -
Psa4g1812 888 Gene3D - 1 162 IPR046336 -
Psa4g1812 888 Gene3D - 695 880 IPR014721 -
Psa4g1812 888 PRINTS Endopeptidase La (Lon) serine protease (S16) signature 409 428 - -
Psa4g1812 888 PRINTS Endopeptidase La (Lon) serine protease (S16) signature 696 712 - -
Psa4g1812 888 PRINTS Endopeptidase La (Lon) serine protease (S16) signature 778 797 - -
Psa4g1812 888 PRINTS Endopeptidase La (Lon) serine protease (S16) signature 808 827 - -
Psa4g1812 888 PRINTS Endopeptidase La (Lon) serine protease (S16) signature 831 849 - -
Psa4g1812 888 ProSiteProfiles Lon N-terminal domain profile. 11 254 IPR003111 -
Psa4g1812 888 Pfam Lon protease (S16) C-terminal proteolytic domain 670 876 IPR008269 GO:0004176|GO:0004252|GO:0006508
Psa4g1812 888 Pfam ATP-dependent protease La (LON) substrate-binding domain 11 254 IPR003111 -
Psa4g1812 888 PANTHER ATP DEPENDENT LON PROTEASE FAMILY MEMBER 1 888 IPR027065 GO:0004176|GO:0004252|GO:0005524|GO:0030163
Psa4g1812 888 TIGRFAM lon: endopeptidase La 13 876 IPR004815 GO:0004176|GO:0005524|GO:0006508
Psa4g1812 888 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 353 619 IPR027417 -
Psa4g1812 888 Gene3D - 366 544 IPR027417 -
Psa4g1812 888 Pfam ATPase family associated with various cellular activities (AAA) 405 542 IPR003959 GO:0005524|GO:0016887
Psa4g1812 888 Gene3D - 166 297 - -
Psa4g1812 888 Gene3D - 545 638 - -
Psa4g1812 888 CDD AAA 386 547 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g1812 Psa-Chr4 128037663 128051022 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g1812 K01338 - gmx:100789982 1553.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa4g1812 4 128037663 128051022 Psa4g1812 4 128037663 128051022 ECH