Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g1797 ATGCTTCCACTTGACACAGTAACAATGGGAGGAAACTTGAACAAACCAAGAGCAATGAATGCTAGTTTGATGGCTTTGAAGAGTGCTGGAGTCGAAGGGGTTATGGTGGATGTTTGGTGGGGTTTGGTTGAAAAAGATGGACCTTTGAAGTATAACTGGGAAGCTTATGCTGAGCTTGTGCAAATGGTGCAAATGCATGGTTTGAAGATTCAGGTTGTTATGTCTTTTCATCAGTGTGGAGGAAATGTTGGAGATTCCTGCAGTGTTCCTTTACCTCCATGGGTGATGGAAGAGATCAGCAAGAACCCTGATATAGTTTACACGGACCGATCCGGGAGGAGAAATCCCGAGTATATATCATTGGGCTGTGATTCAGTGCCTGTGCTAAGAGGAAGAACTCCCCTCCAAGTTTATGCCGACTACATGAGGAGCTTTCGTGACAGATTCGGCGATTACTTAGGCAGTGTCATCTCGGAAATACAAGTAGGGATGGGTCCATGTGGGGAGCTGAGATATCCATCATATCCAGAAAGCAATGGAACTTGGAAGTTTCCTGGAATTGGAGAATTCCAATGTTATGACAAGTATATGAAAGCATCCTTGGCAGCAGTAGCCGAGGCTATCGGAAAGAAAGAATGGGGAAAAGGCGGTCCCCATGACTCCGGACAGTACAAACAGTTTCCTGAGGATACTGGTTTTTTCAGAAAAGATGGAACATGGAACTCTGAATATGGACAGTTCTTTCTGGGATGGTACTCCGGTAAATTGTTGGAACATGGCGAGAACATCCTTGTATCAGCCAAAGAAATATTCCAAACTTCTGGTGTGAAACTATCTGGGAAAATAGCTGGGATCCATTGGCATTACAGATCAAGGTCGCACGCAGCTGAACTAACTGCTGGATACTATAATACGCGGCATAACGATGGATATCTTCCGATAGCGAAAATGTTTGCAAACCATGATGTTGTCTTCAATTTCACCTGCATGGAAATGAAAGACAGGGAACAGCCTGATCATGCTAACTGCTCACCAGAAGGGTTAGTTCACCAAGTAAAGACGGCGGCAAGAAAGGCTAGAATAGAACTTGCAGGGGAAAATGCATTAGAGAGATATGATGCAGGTGGATACGCTCAAGTTTTGTCGACAAGTATGTCCGACTCCGGCAGCGGATTGGCTGCATTTACATACTTGAGAATGAATAAAAAGTTGTTCGAAGGTGATAACTGGCGGCACCTAGTGGATTTTGTAAGAAACATGTCTGAAGGCGGTAGGAGACAGAGACTTCCAGATTCCGATTCGCGCGGAAGTGATATTTATGTTGGGCACATCAAGAAAACTAAAGAGCACAAACAAGAGGTTGAGGCTGTTGTTGTGTGA 1380 0.4449 MLPLDTVTMGGNLNKPRAMNASLMALKSAGVEGVMVDVWWGLVEKDGPLKYNWEAYAELVQMVQMHGLKIQVVMSFHQCGGNVGDSCSVPLPPWVMEEISKNPDIVYTDRSGRRNPEYISLGCDSVPVLRGRTPLQVYADYMRSFRDRFGDYLGSVISEIQVGMGPCGELRYPSYPESNGTWKFPGIGEFQCYDKYMKASLAAVAEAIGKKEWGKGGPHDSGQYKQFPEDTGFFRKDGTWNSEYGQFFLGWYSGKLLEHGENILVSAKEIFQTSGVKLSGKIAGIHWHYRSRSHAAELTAGYYNTRHNDGYLPIAKMFANHDVVFNFTCMEMKDREQPDHANCSPEGLVHQVKTAARKARIELAGENALERYDAGGYAQVLSTSMSDSGSGLAAFTYLRMNKKLFEGDNWRHLVDFVRNMSEGGRRQRLPDSDSRGSDIYVGHIKKTKEHKQEVEAVVV* 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g1797 459 PANTHER - 1 456 IPR001554 GO:0000272|GO:0016161
Psa4g1797 459 Gene3D Glycosidases 1 457 - -
Psa4g1797 459 Pfam Glycosyl hydrolase family 14 1 416 IPR001554 GO:0000272|GO:0016161
Psa4g1797 459 ProSitePatterns Beta-amylase active site 1. 77 85 IPR018238 GO:0000272|GO:0016161
Psa4g1797 459 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 30 44 IPR001554 GO:0000272|GO:0016161
Psa4g1797 459 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 51 69 IPR001554 GO:0000272|GO:0016161
Psa4g1797 459 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 73 94 IPR001554 GO:0000272|GO:0016161
Psa4g1797 459 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 165 187 IPR001554 GO:0000272|GO:0016161
Psa4g1797 459 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 240 259 IPR001554 GO:0000272|GO:0016161
Psa4g1797 459 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 276 292 IPR001554 GO:0000272|GO:0016161
Psa4g1797 459 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 293 304 IPR001554 GO:0000272|GO:0016161
Psa4g1797 459 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 311 334 IPR001554 GO:0000272|GO:0016161
Psa4g1797 459 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 348 370 IPR001554 GO:0000272|GO:0016161
Psa4g1797 459 PANTHER BETA-AMYLASE 3, CHLOROPLASTIC 1 456 - -
Psa4g1797 459 SUPERFAMILY (Trans)glycosidases 1 423 IPR017853 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g1797 Psa-Chr4 126615859 126617562 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g1797 1 457 Glycoside Hydrolase AT4G17090 77.293 0.0 773
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g1797 K01177 - gmx:100818063 846.654
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa4g1797 4 126615859 126617562 Psa4g1797 4 126615859 126617562 ECH