Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g1641 ATGGACAACAGCAGTTCTGGTTCATTAGGCCCAGGAGGCCTCGACCTAACCCAAATCTTCTTCAAACCCATCTCCAACGCATCCCCTCCATCTCTCACCAAAAGCCACAACAAGATCTCCGTCATCGGCGCCGGAAATGTAGGAATGGCCATTGCTCAAACCATCCTCACTCAAGACCTCACTGACGAGCTCGTTATCGTCGATAACAAACCCGACAAGCTCCGCGGCGAGATGCTCGACCTTCAGCACGCTGCTGCTTTCCTCCCCCGCGTCAAGATCAACTCCTCCGTTGAATACTCCGTCACCGCCGGCTCTGATCTGTGTATCGTTACCGCCGGTGCACGACAGATAGCGGATGAGTCCAGGCTTAACCTTCTCCAGAGGAACCTTGCGCTTTTCCAGGGAATTATACCCGTTCTGGCCAGTTACTCGCCGGAAACGATTCTCATAATCGTGTCTAACCCCGTTGACGTTCTCACCTATATCGCATGGAAGCTTTCCGGGTTTCCATCCAACCGGATCATCGGCTCGGGAACCAATTTGGATTCGTCTCGCTTTCGTTTCCTCCTTGCTGATCACCTCCAGGTCAATGCGCAGGATGTTCAGGCATGCATAGTAGGGGAGCATGGGGATAGTTCAGTGGCATTATGGTCAAGTATTAGCGTTGGGGGTGTTCCTGTTCTGAGTTTTTTGGAGAAACAACAAATTGCTTATGAGAAAGAAACGCTGGAGAATATACACAAGAAAGTGATTGACAGTGCTTATGAAGTCATCAATCTAAAAGGCTACACTTCATGGGCTATCGGGTACTCTGTGGCTAGTTTGGCTCGGTCGATTATTAGGGATCAAAGAAAGATCCACCCTGTGTCTGTTTTGGCTACGGGATTTTATGGCATTGGTGATGATGTTGAAGTGTTTTTGAGCTTGCCGGCACAGCTTGGTAGAGGTGGAGTACTTGGTGTAACCAATGTGCACATGAATCAAGAGGAGGAAGAGAGGTTTAGGGACTCTGCTAAAACCATCTTAGAGGTTCAGACTCAGTTGGGTATTTGA 1053 0.4929 MDNSSSGSLGPGGLDLTQIFFKPISNASPPSLTKSHNKISVIGAGNVGMAIAQTILTQDLTDELVIVDNKPDKLRGEMLDLQHAAAFLPRVKINSSVEYSVTAGSDLCIVTAGARQIADESRLNLLQRNLALFQGIIPVLASYSPETILIIVSNPVDVLTYIAWKLSGFPSNRIIGSGTNLDSSRFRFLLADHLQVNAQDVQACIVGEHGDSSVALWSSISVGGVPVLSFLEKQQIAYEKETLENIHKKVIDSAYEVINLKGYTSWAIGYSVASLARSIIRDQRKIHPVSVLATGFYGIGDDVEVFLSLPAQLGRGGVLGVTNVHMNQEEEERFRDSAKTILEVQTQLGI* 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g1641 350 PIRSF Lac_mal_DH 33 350 IPR001557 GO:0016616|GO:0019752
Psa4g1641 350 TIGRFAM L-LDH-NAD: L-lactate dehydrogenase 41 341 IPR011304 GO:0004459|GO:0005737
Psa4g1641 350 PANTHER L-2-HYDROXYCARBOXYLATE DEHYDROGENASE (NAD(P)(+)) 2 350 - -
Psa4g1641 350 Gene3D - 21 178 - -
Psa4g1641 350 Pfam lactate/malate dehydrogenase, NAD binding domain 38 176 IPR001236 GO:0016491
Psa4g1641 350 PRINTS L-lactate dehydrogenase signature 38 62 IPR001557 GO:0016616|GO:0019752
Psa4g1641 350 PRINTS L-lactate dehydrogenase signature 63 87 IPR001557 GO:0016616|GO:0019752
Psa4g1641 350 PRINTS L-lactate dehydrogenase signature 150 170 IPR001557 GO:0016616|GO:0019752
Psa4g1641 350 PRINTS L-lactate dehydrogenase signature 174 192 IPR001557 GO:0016616|GO:0019752
Psa4g1641 350 PRINTS L-lactate dehydrogenase signature 204 217 IPR001557 GO:0016616|GO:0019752
Psa4g1641 350 CDD LDH_1 34 347 - -
Psa4g1641 350 SUPERFAMILY LDH C-terminal domain-like 177 347 IPR015955 GO:0003824|GO:0016616
Psa4g1641 350 PANTHER L-LACTATE DEHYDROGENASE 2 350 - -
Psa4g1641 350 Hamap L-lactate dehydrogenase [ldh]. 36 349 IPR011304 GO:0004459|GO:0005737
Psa4g1641 350 Pfam lactate/malate dehydrogenase, alpha/beta C-terminal domain 179 343 IPR022383 GO:0016616
Psa4g1641 350 ProSitePatterns L-lactate dehydrogenase active site. 206 212 IPR018177 GO:0004459
Psa4g1641 350 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 22 176 IPR036291 -
Psa4g1641 350 Gene3D - 179 348 IPR015955 GO:0003824|GO:0016616
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g1641 Psa-Chr4 114517932 114519143 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g1641 K00016 - gmx:100814897 569.696
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa4g1641 4 114517932 114519143 Psa4g1641 4 114517932 114519143 ECH