Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g1526 ATGAGGAGGGACATGATTGAATTTGAGCGTGTTCTTAGTTACTTTGATGAAGATGGTGATGGAAAGATTTCGCTGACCGAGTTAAGGAGTCGAATGGCGAAGATTAGTGGAGAGTTTGAATTGAAAGAAGCGGAAATTGCTATTGAGTCATTGGATTCTGATGAAGCGGAAATTGCTATTGAGTCATTGGATTCTGATGGTGATGGTTTATTGAGTTTGGAGGATTTGATAAAGCTTATCGAATCTGCTTGTGAGGAAGAGAAATTGAAGGATTTGAAGGAAGCATTTGAAATGTATGATAATGAAGGGCGTGGCTTCATAACACCAAAGAGTTTGAAGAGAATGTTGAAAAAATTGGGAGATTCTTCTAAGTCCATTGAAGAATGTAAATTGATGATCGGAAGGTTTGATTTGAATGGGGATGGTTTGCTTAGTTTTGAAGAATTTAGAATTATGATGACATGA 465 0.3699 MRRDMIEFERVLSYFDEDGDGKISLTELRSRMAKISGEFELKEAEIAIESLDSDEAEIAIESLDSDGDGLLSLEDLIKLIESACEEEKLKDLKEAFEMYDNEGRGFITPKSLKRMLKKLGDSSKSIEECKLMIGRFDLNGDGLLSFEEFRIMMT* 155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g1526 154 ProSiteProfiles EF-hand calcium-binding domain profile. 51 86 IPR002048 GO:0005509
Psa4g1526 154 ProSiteProfiles EF-hand calcium-binding domain profile. 3 38 IPR002048 GO:0005509
Psa4g1526 154 ProSiteProfiles EF-hand calcium-binding domain profile. 124 154 IPR002048 GO:0005509
Psa4g1526 154 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 55 153 - -
Psa4g1526 154 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 6 54 - -
Psa4g1526 154 ProSitePatterns EF-hand calcium-binding domain. 137 149 IPR018247 -
Psa4g1526 154 Gene3D - 1 84 - -
Psa4g1526 154 Gene3D - 85 154 - -
Psa4g1526 154 Pfam EF-hand domain pair 11 80 IPR002048 GO:0005509
Psa4g1526 154 Pfam EF-hand domain pair 90 153 IPR002048 GO:0005509
Psa4g1526 154 PANTHER EF HAND CALCIUM-BINDING FAMILY PROTEIN 55 153 - -
Psa4g1526 154 PANTHER EF HAND CALCIUM-BINDING FAMILY PROTEIN 6 54 - -
Psa4g1526 154 SUPERFAMILY EF-hand 7 153 IPR011992 -
Psa4g1526 154 CDD EFh 91 154 IPR002048 GO:0005509
Psa4g1526 154 ProSitePatterns EF-hand calcium-binding domain. 16 28 IPR018247 -
Psa4g1526 154 SMART efh_1 91 119 IPR002048 GO:0005509
Psa4g1526 154 SMART efh_1 55 83 IPR002048 GO:0005509
Psa4g1526 154 SMART efh_1 128 154 IPR002048 GO:0005509
Psa4g1526 154 SMART efh_1 7 35 IPR002048 GO:0005509
Psa4g1526 154 ProSiteProfiles EF-hand calcium-binding domain profile. 87 122 IPR002048 GO:0005509
Psa4g1526 154 Coils Coil 82 102 - -
Psa4g1526 154 ProSitePatterns EF-hand calcium-binding domain. 64 76 IPR018247 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g1526 Psa-Chr4 106312976 106313532 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g1526 7 153 EF-hand Containing Proteins AT1G76650 44.898 7.95e-32 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g1526 K13448 - gmx:100816563 191.815
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa4g1526 4 106312976 106313532 Psa4g1526 4 106312976 106313532 ECH