Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g1420 AGGAAACCACAAGGAAGTTCAAAAGCTGAAGCAAGTCAAGTTAAAGACAAAGAAAGTAATGTTGAAGCAAGTAAAGCTAAACCAAATGCTGAAGCAATTCAAGCTGAAGCAAGTAAAGCCAAATCAAATGCTGAAACAAGTCAAGCTGAAGAAAAACAAAATCAGAGTCCAAAGAAGGACAAAGATGTGTTAAAGGGAATTAGGGTTTCAGTGCTCTTCTTCTATAAACTGCTACGCTTTCGTTCGTCTTTTATAGCTATGGATTCGTCTCTCGTGATCAAGGCGAAGTATGGAGATACTCTCAGGCGATTCAGTGTTCGCGTGGATGAGAATAACCGACTTGATCTTAACATGGTTGGGTTGAGGGCTAAGATATGCTCTGTTTTCAATTTCGCCACTGATGCTAATTTTATTCTGAGATATGTGGATGAAGATGGTGACTTGGTGAATCTTGTGGATGATGAAGATTTGCATGATGTGATGAGACAGCAATTGAAGTTCTTGAGAATTGATGTACATATGATCAATAATTCTGATGTTAAATCAGATGCTGATGGCTCTAGTGGAAGTGCTACTCCTTTAAGAGCTAATCCTGTCTCAGACCCGTTTGTAGCTGATGCTTTGCTAGCTCTGCCAGAGCCGTTGCGCGAGGCTCTTTATTCATCATTTTCCAAAGCCGCGTCTTCAAATCCAGTGCTAGCAAATATTGCTGATTCAATTTCCAAAATTGGACAATCCATTCTAAAGCCTCAAGGCAATTCTCATACTGCAGGTGGCTCTGGCTCAGGCTCAGGCTCGAAAAAAGGCGTTCCTGATGTAACTGTCACTCCAGAAGCAAAAGGTTCACAGTCTCCATCTGTGGATTCTGCTTCTGGTGTTTCAATTTCTGTGCCAGATGTACTGCAGGAGGCTCTTTCTAATTTATCAGTTTTAAAAGCTGCAACTGCAAAAAAAGTGCTTCGCAATTTCACTGATTCAATTTCAAAAACACATCTGAAATCTCACTACCGGGGCCCTCTTGTTGCAGCTGGTCCAAGCTCCAAAAAAAATGTTCATGAAGAACTTGTCACTTCCGAAGCAAGAGGTCCACAGTCTCCATTTCCGGGCTCTGCTTCCGATGTCAATAGCCAGGCGGCAGCCTACAATGTCCGGCAACATGTTGAGGCTGAAAACATGAATAGGAATGTACTGGCAGCCTCCACTGCCGGTCGACAGGTGGACTCTGGAAATGCGGGAATTGCCCCTGTTGATCTCAATTCATCCACAAATATGAATAAAGTACCACTCTCATCAGCAGTTCCTGTTAGTGTTGACAAGGGTAAAGCGTCTATTGATGACAGTGTTGCTGGTAAGGGTGAAAGAGTTCCAGTTAGTGTTGACAAGGGTAAAGCCTCTATTGATGACAGTTTTGCTGGTAAGCATGAAAGATGTGTAACATCAATGAATTCTGCTGTTCCTAGTAACTTAAACAAGAATCCTGCAATAAGTTTCGGTGCTCCTTTTGACTGCCCATTTTCTGGGCCACATAATCTTCATTCAATGCCACATCCTCTACATTCAATGCCACATCCTCTAGGTAACTTTCGCATTCCTCCATTTAAAAGGAGCCACAGTCACTCTGATGCATTGAATGGTATGTTTCACAAGGGTGTCCGCTGTGATGGCTGTGGAGTCTATCCAATAACTGGACCTCGTTTCAAATCCAAAGTAAAAGAAAACTATGACCTCTGCAGCATTTGCTTCAACGAATTTGGTAATCACACTGATTATATCAGGATGGACCGTCCTGCATCTTTTCGGGGTCCAAGATGTTTATATCAGAATCCCAAAGAATTTAGGCTTCCAAAGATACCACAGCATGTTTTAAAAACAGCTGGGAAGCATGCAAGGCCAAGGCTAGATAGTCGGTTCATTTTGGATGTCAATGTTATAGATGGTACAATGATGGCTCCATCTACTCCGTTCACGAAGATCTGGCGGATGCGCAACAATGGCACAATAGCGTGGCCCAAGCGAACTCAACTTGTTTGGATTGGAGGGGACAAATTAAGTGAATCACATTCTGTTGACTTGGAGGTTCCCGATTCTGGTATATCCGCGGAGATGGAGCTTGACATTGCAGTTGATTTTATCGCACCCCAGTCACCTGTTGATTTTATCGCACCCCAGTCACCTGGTAGATACATATCATACTGGAGGATGGCATCTCTCTCCGGACATAAATTTGGCCAATGGGTTTGGGTCCTTATACAGGTTGATGCTTCTCTCAAGGACTCATTCTATGATAGCTTTCAAGGCCTGAACTTGAATATTCCCCTTGGTGGGGGTAGCTCTGAAGGGCCTCAGATTATAGATATCAATGTTCAACCTGTTGAGGATGTTGCTTTTCACCAACCCAAAAATCCTAATGCTCCACCTGAAGCTGTGAATCAAATGGTTGATAAGGAACTAAGACCAGAACTGGGAAATGAATTTCCTATCAATAAAGCTACATTTGTTGGCCCTGCCGCCTCAGCCCCTGCAATTCCGGAGGCATCTTCATCTGTTTCTTACCCCATCATTGATTTCTATGGCTCAGCCCCTGCAATTTTGGCAACACCTTCAACTGTTTCTTACCCAATAATTGACTTATCTGGCACAACCCGGGCTGTTCCCTCCAACCAGCAAGCCTCAACTGCGGATGCACTATTATCCTCTTTAGACAAGGATGGAAATGATTCTGTGGAAGAGGCCCTCCTTAAAGAGCTTGAGGAGATGGGTTTTAAGCAGATTGATTTAAACAAAGAGGTTCTGCGAATGAATGAGTACAATCTGGAGCAGTCAATAGATGAACTCTGTGGTGCTTCTGAGTGGGATCCTCTCCTTGAAGAGTTGCATGATATGGGTTTTTGTGACAGAGAGACTAACAAGAGGCTGCTGTTGAAGAACGAAGGAAGCATTAAGCGTGTTGTTATGGACTTAATCAATGGAGAGTAG 2976 0.4335 RKPQGSSKAEASQVKDKESNVEASKAKPNAEAIQAEASKAKSNAETSQAEEKQNQSPKKDKDVLKGIRVSVLFFYKLLRFRSSFIAMDSSLVIKAKYGDTLRRFSVRVDENNRLDLNMVGLRAKICSVFNFATDANFILRYVDEDGDLVNLVDDEDLHDVMRQQLKFLRIDVHMINNSDVKSDADGSSGSATPLRANPVSDPFVADALLALPEPLREALYSSFSKAASSNPVLANIADSISKIGQSILKPQGNSHTAGGSGSGSGSKKGVPDVTVTPEAKGSQSPSVDSASGVSISVPDVLQEALSNLSVLKAATAKKVLRNFTDSISKTHLKSHYRGPLVAAGPSSKKNVHEELVTSEARGPQSPFPGSASDVNSQAAAYNVRQHVEAENMNRNVLAASTAGRQVDSGNAGIAPVDLNSSTNMNKVPLSSAVPVSVDKGKASIDDSVAGKGERVPVSVDKGKASIDDSFAGKHERCVTSMNSAVPSNLNKNPAISFGAPFDCPFSGPHNLHSMPHPLHSMPHPLGNFRIPPFKRSHSHSDALNGMFHKGVRCDGCGVYPITGPRFKSKVKENYDLCSICFNEFGNHTDYIRMDRPASFRGPRCLYQNPKEFRLPKIPQHVLKTAGKHARPRLDSRFILDVNVIDGTMMAPSTPFTKIWRMRNNGTIAWPKRTQLVWIGGDKLSESHSVDLEVPDSGISAEMELDIAVDFIAPQSPVDFIAPQSPGRYISYWRMASLSGHKFGQWVWVLIQVDASLKDSFYDSFQGLNLNIPLGGGSSEGPQIIDINVQPVEDVAFHQPKNPNAPPEAVNQMVDKELRPELGNEFPINKATFVGPAASAPAIPEASSSVSYPIIDFYGSAPAILATPSTVSYPIIDLSGTTRAVPSNQQASTADALLSSLDKDGNDSVEEALLKELEEMGFKQIDLNKEVLRMNEYNLEQSIDELCGASEWDPLLEELHDMGFCDRETNKRLLLKNEGSIKRVVMDLINGE* 992
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g1420 991 CDD UBA_NBR1 950 988 - -
Psa4g1420 991 Gene3D - 541 596 IPR043145 -
Psa4g1420 991 PANTHER OVARIAN CARCINOMA ANTIGEN CA125-RELATED 865 991 - -
Psa4g1420 991 PANTHER OVARIAN CARCINOMA ANTIGEN CA125-RELATED 85 865 - -
Psa4g1420 991 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 907 948 IPR015940 -
Psa4g1420 991 Gene3D - 949 990 - -
Psa4g1420 991 SMART PB1_new 90 175 IPR000270 GO:0005515
Psa4g1420 991 ProSiteProfiles Zinc finger ZZ-type profile. 548 598 IPR000433 GO:0008270
Psa4g1420 991 Gene3D - 902 948 - -
Psa4g1420 991 MobiDBLite consensus disorder prediction 251 269 - -
Psa4g1420 991 Coils Coil 30 50 - -
Psa4g1420 991 CDD NBR1_like 631 753 IPR032350 -
Psa4g1420 991 SUPERFAMILY RING/U-box 544 598 - -
Psa4g1420 991 SUPERFAMILY UBA-like 951 989 IPR009060 GO:0005515
Psa4g1420 991 Pfam Ig-like domain from next to BRCA1 gene 642 752 IPR032350 -
Psa4g1420 991 SMART zz_5 547 589 IPR000433 GO:0008270
Psa4g1420 991 ProSiteProfiles PB1 domain profile. 90 172 IPR000270 GO:0005515
Psa4g1420 991 Pfam PB1 domain 92 170 IPR000270 GO:0005515
Psa4g1420 991 SUPERFAMILY CAD & PB1 domains 81 167 - -
Psa4g1420 991 MobiDBLite consensus disorder prediction 357 377 - -
Psa4g1420 991 PANTHER PROTEIN JOKA2 865 991 - -
Psa4g1420 991 PANTHER PROTEIN JOKA2 85 865 - -
Psa4g1420 991 MobiDBLite consensus disorder prediction 363 377 - -
Psa4g1420 991 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 941 990 IPR015940 -
Psa4g1420 991 MobiDBLite consensus disorder prediction 1 60 - -
Psa4g1420 991 Pfam Zinc finger, ZZ type 548 586 IPR000433 GO:0008270
Psa4g1420 991 Gene3D - 87 174 - -
Psa4g1420 991 Gene3D Immunoglobulins 627 756 IPR013783 -
Psa4g1420 991 MobiDBLite consensus disorder prediction 251 271 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g1420 Psa-Chr4 99921374 99927520 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g1420 K17987 - gmx:100778692 859.366
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa4g1420 4 99921374 99927520 Psa4g1420 4 99921374 99927520 ECH