Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g1372 ATGGCGCTTGTTCGTGTGTTCCCAACCAGCACCACCCTTCCTCGTCTTGCTTCAACACTTTCCCTTACAACCAAATTTGTCGTTCGGAGCTCTAACCTTCAACTTCAATCGCAACCCACTGACTCGCGCAAGTTAGTTCTGGAAGTGAAGGACAGGCTTGAAAAAGAACACTATACTCTTCCTATTGGTAGAAATGGTAGGGATGATGAAGATATGATACTATGGTTTCTTAAAGATCGCAAATTTTCTGTTGAAGAAGCTGTTTCTAAGTTGGCTAAAACCATTAAATGGCGTCAAGATTTTGAGGTCTCTAAATTGACGGAAGAATCTGTTAAAGACGTTGTTAAAACTGGAAAAGCATATATACATGACTTTCTAGATGTTAATCACAGGCCCGTGCTTGTGGTGGTTGCAGCAAAGCATTTTCCTAAAGCACAGGAGCCTGTAGATGATGAGAGGTTATGTGTTTTCTTAATTGAGAAGGCATTGAGTAAGCTTCCACCTGGGAAAGAACAGATACTTGGAATATTTGATCTCAGAGGTTTTGGTACAGAAAATGCTGATCTTAGATACTTGACATTTTTGTTTGATGTGTTCTATTGTTACTATCCAAAGCGATTATCTCAAGTATTGTTTGTGGATGCTCCTTTTGTGTTTAAGCCAATTTGGCAGCTTACCAAGCCGTTGTTAAAATCATATGCTTCTCTGGTGAGGTTTTGCTCTGCAGAGACTGTGAGGAAGGAATATTTTACAGATGAAACTTTGCCGCCAAATTTCAGAGGATGGAAGCTCAAACAAATTGTTACTCTACTTACATGCGTCCTCAAGGCTAAATATTTCTGTTCACTTGTTTCGCTTCGTTACCGTTGGCATATTGGTGATGGTAATTCGATAGCTGCCCGATCTGAACTTTGTATCCGATCTAGAACTCCCCGGCTACTCCTTCACCTCCTCTGGCTATTCAATTATTGTCTCCAACTTAGAGAAAGCGTTCCTACCGGGTGGAATTCAATCACTCTGAGGTGTCCTTTGCTGGAAATAAATTGGCCTTTGGAATCTTATAGAGCCCTTGTTAAACAACGCAACACAACTGCAACCAACGAATCGCCGCCGTACACGGTCGTTCACACCGACTCCGATTTCGAGATCAGACTCTACCAAACCTCCGTCTGGATGTCCGCTCCCGCCCTAAACATCATCTCCTTCGAGAAAGCCACGTGGAACGGCTTCCACAGATTGTTCCAGTTCATACAAGGCGCCAATCTCAATTTCTCACGAATTCCGATGACCGCTCCAGTATTAACAACCATGGTACCCGGTGCTGGGCCCCTCGAATCACAAGGCTATTATGTTAGTTTCTATTTGCCGGTGAAATTCCAAGCGGATCCACCGCTTCCACTTCCGGAACTCAATATCAAACCCTATGATTTTGACAGCCACTGCGTTGCTGTAAGAAGATTCTCTGGATTTGCGAAGGATGAAAGGATTGTTAAAGAAGCGGAGAAGCTGGATTCGAGCCTGAGTAGGTCGCCGTGGGGTGAGTTGAAGAGTCAACGCGGTTACTCGATTGCGCAGTATAATTCTCCTTTTCGGATTGCTAAACGGAGGAATGAGGTTTGGGTGGATGTTCATGCTCCTGAATTGGGATGTAAATTAGTTGGTGTTGCAGCATATTGA 1677 0.4365 MALVRVFPTSTTLPRLASTLSLTTKFVVRSSNLQLQSQPTDSRKLVLEVKDRLEKEHYTLPIGRNGRDDEDMILWFLKDRKFSVEEAVSKLAKTIKWRQDFEVSKLTEESVKDVVKTGKAYIHDFLDVNHRPVLVVVAAKHFPKAQEPVDDERLCVFLIEKALSKLPPGKEQILGIFDLRGFGTENADLRYLTFLFDVFYCYYPKRLSQVLFVDAPFVFKPIWQLTKPLLKSYASLVRFCSAETVRKEYFTDETLPPNFRGWKLKQIVTLLTCVLKAKYFCSLVSLRYRWHIGDGNSIAARSELCIRSRTPRLLLHLLWLFNYCLQLRESVPTGWNSITLRCPLLEINWPLESYRALVKQRNTTATNESPPYTVVHTDSDFEIRLYQTSVWMSAPALNIISFEKATWNGFHRLFQFIQGANLNFSRIPMTAPVLTTMVPGAGPLESQGYYVSFYLPVKFQADPPLPLPELNIKPYDFDSHCVAVRRFSGFAKDERIVKEAEKLDSSLSRSPWGELKSQRGYSIAQYNSPFRIAKRRNEVWVDVHAPELGCKLVGVAAY* 559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g1372 558 CDD SEC14 112 261 IPR001251 -
Psa4g1372 558 Gene3D - 19 273 IPR036865 -
Psa4g1372 558 SUPERFAMILY CRAL/TRIO N-terminal domain 35 110 IPR036273 -
Psa4g1372 558 Gene3D Regulatory factor, effector binding domain 367 548 IPR011256 -
Psa4g1372 558 PANTHER SEC14P-LIKE PHOSPHATIDYLINOSITOL TRANSFER FAMILY PROTEIN 18 260 - -
Psa4g1372 558 Pfam CRAL/TRIO domain 116 258 IPR001251 -
Psa4g1372 558 SMART sec14_4 114 264 IPR001251 -
Psa4g1372 558 Pfam SOUL heme-binding protein 368 541 IPR006917 -
Psa4g1372 558 SUPERFAMILY Probable bacterial effector-binding domain 364 543 IPR011256 -
Psa4g1372 558 SUPERFAMILY CRAL/TRIO domain 109 249 IPR036865 -
Psa4g1372 558 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 108 261 IPR001251 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g1372 Psa-Chr4 95241743 95245670 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g1372 - - vun:114175521 401.749
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa4g1372 4 95241743 95245670 Psa4g1372 4 95241743 95245670 ECH