Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g1361 ATGGCGAGCGCAAACGATTCCGGCGTGGAAGCATTCCGGCGCCTGAAAGAACTAGAACCACCTTCATTGCTTGTACCGAATCCAACGGTATCGGAAACTGCTCGTGCTGCATCGAAATACCTATTCTCCTCCCTCAGACCATTCTCCCCAAAATCGCCACTGGACCAACTCCTCGTTGACGGCTACGATGCTGAGCAGATTTGGCATCAAATTGATCTCCAATCACAGCCACTGATGTCCACTCTTCGCCGCCGGTTGAATCAGCTGGTCAAAAACGCTGAGGAAATTGTGCCGCTGAAGGTTCCTTCGGATGTTGCTAACAAGGCGGAGCCAAAGGAGCAGGACCAGTGGGAAGAAGAAAGTGACGGTCTTGATGAGGAATTGGATGAAGCTGACGAAGACAAGGATGATTTTGAAGGATTAGAAGACGAGGATGATGAAGAGGAGAAAGGTGAAGGTGGTGGCATTGAAGATAAATTTTTGAAAATAGATGAATTGAATGATTATTTACAGAAACAGGAAGATAATTATGAGAAGGGTGAGGAGGGAGATCAAGACAGTGAAGATGATGATTACCTTGACAAGGCTGGGGAGTTTGAGATGGATGAGGATGAGGATGATGAAGAAGATGAAGAAGCGGAAGGCATGGGATATGAAAGGTATGAAGACTTCTTTGGAGGTAAAAAAGAAAAGGGCTCAAAAAGAAAAGAACAATTGCTTGAGAAAACTAAAGATTTTGATGATAAAGATGACATGGAATCTGACAAACAGAAGATAAGGACTGCTTCTACCCATGAAAAGCAGCTGGAAAAAATTCAATCAAACATAAAACTGATGGAGAAAGCTAACATAGAGCCAAAAACTTGGACTATGATGGGAGAGGTAACTGCTGCAAAGAGACCTTTGGATAGTGCTTTGGAAGTTGATATTGACTTTCAGCATAATGTGAGACCTCCTCCTGTAATCACTGAGGAGATTAATTCTTCAATTGAGGAAATGATCAAGAAAAGGATTATTGAGGGGAGATTTGATGATGTCCAAAGAGCTCCTAAATTGCCATCAAAAGCGCCCCGGGAAGTTAAAGAATTGGATGATAATAAAAGCAAGCAGGGTCTTGCAGAGATTTATGAGCAAGAATATGTTCAGAAGATTGACCCCACTTCTGCTCCATTGTCAGCCAAAGATAAACTAAAAAATGAGGCTAGCATCCTGTTTAAGAAGATCTGTTTGAAACTGGACGCCCTTTCTCATTTCAACTTTGCTCCAAAACCGGTTATAGAGGACATGTGCTTTCAAACAAATGTACCTGCTCTGGCAATGGAAGAAATTGCTCCTGTGGCTGTTTCAGATGCTGCTATGCTGGCTCCTGAGGAGGTTTTTGATGGTAAGGGTGATGTTAAAGAAGAAGCAGAACTTACACAGGCAGAAAGGAAAAGGAGGAGAGCTAATAAGAAAAGAAAATTTAAAGCTGAGGCAGTAAAAAGGTCGGAAAAGAAGGCAAAGTCAGAAAAGAAGCCAGACAATGCAATTTCTGAACAAGTTGATGGTTAA 1551 0.4236 MASANDSGVEAFRRLKELEPPSLLVPNPTVSETARAASKYLFSSLRPFSPKSPLDQLLVDGYDAEQIWHQIDLQSQPLMSTLRRRLNQLVKNAEEIVPLKVPSDVANKAEPKEQDQWEEESDGLDEELDEADEDKDDFEGLEDEDDEEEKGEGGGIEDKFLKIDELNDYLQKQEDNYEKGEEGDQDSEDDDYLDKAGEFEMDEDEDDEEDEEAEGMGYERYEDFFGGKKEKGSKRKEQLLEKTKDFDDKDDMESDKQKIRTASTHEKQLEKIQSNIKLMEKANIEPKTWTMMGEVTAAKRPLDSALEVDIDFQHNVRPPPVITEEINSSIEEMIKKRIIEGRFDDVQRAPKLPSKAPREVKELDDNKSKQGLAEIYEQEYVQKIDPTSAPLSAKDKLKNEASILFKKICLKLDALSHFNFAPKPVIEDMCFQTNVPALAMEEIAPVAVSDAAMLAPEEVFDGKGDVKEEAELTQAERKRRRANKKRKFKAEAVKRSEKKAKSEKKPDNAISEQVDG* 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g1361 516 PIRSF snoRNP_Mpp10 1 154 IPR012173 GO:0005634|GO:0005732|GO:0006364|GO:0034457
Psa4g1361 516 PIRSF snoRNP_Mpp10 233 515 IPR012173 GO:0005634|GO:0005732|GO:0006364|GO:0034457
Psa4g1361 516 PIRSF snoRNP_Mpp10 142 260 IPR012173 GO:0005634|GO:0005732|GO:0006364|GO:0034457
Psa4g1361 516 Coils Coil 262 282 - -
Psa4g1361 516 Coils Coil 114 144 - -
Psa4g1361 516 MobiDBLite consensus disorder prediction 493 516 - -
Psa4g1361 516 MobiDBLite consensus disorder prediction 116 152 - -
Psa4g1361 516 Coils Coil 163 183 - -
Psa4g1361 516 MobiDBLite consensus disorder prediction 218 268 - -
Psa4g1361 516 MobiDBLite consensus disorder prediction 465 516 - -
Psa4g1361 516 MobiDBLite consensus disorder prediction 102 268 - -
Psa4g1361 516 Pfam Mpp10 protein 237 495 IPR012173 GO:0005634|GO:0005732|GO:0006364|GO:0034457
Psa4g1361 516 Pfam Mpp10 protein 50 255 IPR012173 GO:0005634|GO:0005732|GO:0006364|GO:0034457
Psa4g1361 516 Coils Coil 465 492 - -
Psa4g1361 516 MobiDBLite consensus disorder prediction 180 217 - -
Psa4g1361 516 PANTHER U3 SMALL NUCLEOLAR RIBONUCLEOPROTEIN PROTEIN MPP10 3 509 IPR012173 GO:0005634|GO:0005732|GO:0006364|GO:0034457
Psa4g1361 516 MobiDBLite consensus disorder prediction 153 179 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g1361 Psa-Chr4 94926153 94931489 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g1361 K14559 - gmx:100781093 619.002
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa4g1361 4 94926153 94931489 Psa4g1361 4 94926153 94931489 ECH