Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g1348 ATGCCAGCTATGGTGAAAAATGAAGCAAAATCAATCAATGAGTTTGAGAATCCTTCATTCTCTAAGAAAATCTTAAATCAAACCAATTCACCACAAAGTGTATGTGAAATGCACTTTTCTCGTCGATCACCTTCCACTTCTAGAAGCTTTGGATCCGAGAGTGATTGGTCTATAACGGATTCGGAATTTTATCATATTCACAAAGAGGAAATGGAGAGAGGTATAAAGAGGGACTCAAGAGCTAAGGGAAAAACTCCTAATGTAAAACCTCCTATTGAAAGGAAGAGTGACAACAATCTTTTGAGAAAGCAAAATACAACTGTTGCTACTCGTGTTATAAAACCGAAGAGTTCTTCGATTGGAAGATCAAGGTCGCAAAGTCAAGTCGAGAATCCCAAAGAATCGATGTTAGATAATGCTGAACTTGGACCGTTTTTGCTAAAGCAGGCAAGGGACTTGATTTCATTAGGAGAAAATCCTCAGACAGCGCTTGAATTATCGATTCAAGCAATGAAAGTGTTTGAGAAATCTGCAAATGGTAAACCGAGTTTGGATTTGGTTATGTGTTTGCATGTTATTGCAGCAATATATTGCAGCTTGGGCCATTACAATGAGGCGATTCCAATTTTAGAGAGATCGATCGAGATTCCTGTTGTCGGGGAAGGTCAACAACATGCCATAGCGAAATTCGCCAGTCACATGCAGCTTGGAGACACTTATGCCATGCTAGGACAGCTTGAGAATTCAATTATGTGTTACACGAAAGGGTTGGAAGTGCAAAGAAAGGTTTTAGGAGTAACAGATCCAAGAGTTGGTGAAACTTGTAGGTATGTAGCAGAAGCTAATTTTCAAGCAATGCGATTTGACGAAGCGGAGAGGCTTTGTCAAATGGCTCTTGATATTCATGGAGCAAATGGTTCACCTTCTTCTCTTGAAGAGGCGGCGGATAGAAGATTGATGGGACTTATATGTGAAACTAATGGAAATCATGAGGCTGCATTAGAGAATCTTGTTTTAGCAAGCATAGCAATGGTATCAGATGGCCAAGAAGTGGAAGTGGCGTCCGTTGATTGCAGCATTGGAGACACATTTCTGTCATTGGCTCGATATGATGAGGCTATCTTGGCGTATAAAAAGGCGCTAGCGGTTTTCAAAACTCACAAAGGAGAGAATCATCCTGCTGTTGGATCGGTCTTTGTACGTTTGGCCGAGTTGTATAGTAGGACATGGAAGACAAGAGAATCAAAATCATATTGTGAAAATGCACTTAAAATCTATGAAAATCCCATGTCTGGTGTCCCTTCTGACCAAATTGCTAGTGGTCTTGTGAATGTTGCAGCTATTTATGAGTCAATGAATGAGCTTGAACAGGCACTCAAGTTACTGCACAAGGCATTAGAGATACACAGTGATGCTCCTGGTCAACAAAACACAATAGCAGGAATTGAAGCTCAAATGGGGGTCATATACTATGTGTTGGGAAACCAGACTGAATCCTATAATGCTTTCAAGAATGCTGTCTCGAAGCTTCGTGCCACGGGAGAGAAAAAATCGGCCTTCTTTGGTATTGTTCTGAATCAAATGGGTCTTAGTTGTGTGCAACTTTGTGAGTTAAATGAGGCTGCAAAATTATTTGAAGAAGCAAAGGTTGTTCTGGAAAAAGAGTATGGCCCCTATCACCCTGAAACACTTGGGGTATATAGCAACCTTGCTGGCACATATGATGCAATGGGAAGGGTGGATGATGCAATTGATCTAATGGAGTACATTGTGGTTGTGAGGGAGGAAAAGCTTGGGACAGCACACTTTGATGTTGTTGATGAGAAGAGAAGATTGGATGAGTTGTTGAAGGAAACTGGTAGAGTTCGGAACAGAAAAACCATGTCACTTGAGAATCTTCTTGATGTTAATACTTATCTATAA 1923 0.4067 MPAMVKNEAKSINEFENPSFSKKILNQTNSPQSVCEMHFSRRSPSTSRSFGSESDWSITDSEFYHIHKEEMERGIKRDSRAKGKTPNVKPPIERKSDNNLLRKQNTTVATRVIKPKSSSIGRSRSQSQVENPKESMLDNAELGPFLLKQARDLISLGENPQTALELSIQAMKVFEKSANGKPSLDLVMCLHVIAAIYCSLGHYNEAIPILERSIEIPVVGEGQQHAIAKFASHMQLGDTYAMLGQLENSIMCYTKGLEVQRKVLGVTDPRVGETCRYVAEANFQAMRFDEAERLCQMALDIHGANGSPSSLEEAADRRLMGLICETNGNHEAALENLVLASIAMVSDGQEVEVASVDCSIGDTFLSLARYDEAILAYKKALAVFKTHKGENHPAVGSVFVRLAELYSRTWKTRESKSYCENALKIYENPMSGVPSDQIASGLVNVAAIYESMNELEQALKLLHKALEIHSDAPGQQNTIAGIEAQMGVIYYVLGNQTESYNAFKNAVSKLRATGEKKSAFFGIVLNQMGLSCVQLCELNEAAKLFEEAKVVLEKEYGPYHPETLGVYSNLAGTYDAMGRVDDAIDLMEYIVVVREEKLGTAHFDVVDEKRRLDELLKETGRVRNRKTMSLENLLDVNTYL* 641
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g1348 640 ProSiteProfiles TPR repeat profile. 354 387 IPR019734 GO:0005515
Psa4g1348 640 Gene3D Tetratricopeptide repeat domain 140 333 IPR011990 GO:0005515
Psa4g1348 640 Pfam Tetratricopeptide repeat 232 262 IPR019734 GO:0005515
Psa4g1348 640 PANTHER KINESIN LIGHT CHAIN 6 637 - -
Psa4g1348 640 Pfam Tetratricopeptide repeat 442 472 IPR019734 GO:0005515
Psa4g1348 640 Pfam Tetratricopeptide repeat 523 587 - -
Psa4g1348 640 Pfam Tetratricopeptide repeat 158 216 - -
Psa4g1348 640 Pfam Tetratricopeptide repeat 353 428 - -
Psa4g1348 640 ProSiteProfiles TPR repeat profile. 439 472 IPR019734 GO:0005515
Psa4g1348 640 Gene3D Tetratricopeptide repeat domain 338 517 IPR011990 GO:0005515
Psa4g1348 640 Gene3D Tetratricopeptide repeat domain 518 628 IPR011990 GO:0005515
Psa4g1348 640 MobiDBLite consensus disorder prediction 114 134 - -
Psa4g1348 640 SMART tpr_5 439 472 IPR019734 GO:0005515
Psa4g1348 640 SMART tpr_5 187 220 IPR019734 GO:0005515
Psa4g1348 640 SMART tpr_5 230 263 IPR019734 GO:0005515
Psa4g1348 640 SMART tpr_5 480 513 IPR019734 GO:0005515
Psa4g1348 640 SMART tpr_5 396 429 IPR019734 GO:0005515
Psa4g1348 640 SMART tpr_5 522 555 IPR019734 GO:0005515
Psa4g1348 640 SMART tpr_5 564 597 IPR019734 GO:0005515
Psa4g1348 640 SMART tpr_5 272 305 IPR019734 GO:0005515
Psa4g1348 640 SMART tpr_5 354 387 IPR019734 GO:0005515
Psa4g1348 640 PANTHER PROTEIN KINESIN LIGHT CHAIN-RELATED 3 6 637 - -
Psa4g1348 640 SUPERFAMILY TPR-like 187 472 IPR011990 GO:0005515
Psa4g1348 640 MobiDBLite consensus disorder prediction 114 135 - -
Psa4g1348 640 Coils Coil 452 472 - -
Psa4g1348 640 SUPERFAMILY TPR-like 361 599 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g1348 Psa-Chr4 94355505 94358651 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g1348 - - gmx:100813461 847.04
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa4g1348 4 94355505 94358651 Psa4g1348 4 94355505 94358651 ECH