Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g1302 ATGATTCCCCCTCGTTACTATTCCGCATGTCTCCTTCTCTTCCTCCTCTTACTCTCCACCTCTCTCTCCCAATCCCATCGCGCTGCCAAGAAAAAACGCATGCGAGAAAAAGTTCGCAACATGTTTCACCATGCCTATGACAACTATATGACTCATGCGTTTCCGCATGATGAGTTAAAACCTCTCACTAAAACTTTCACCGACTCCCTAGTCGAGCTGGGGAATTTGAAGCTTGAACGTTTGCCTCAAGATTATAATGGCTCTGCGCTTTCGCTTATTGAATCGTTGTCTAGCCTTGTGATTATGGGAAATGATACTGAATTCGAGAAGGGAGTGCGGTGGCTTTCGGAAAATCTAACATTTGACGTTGATGCGCGAATAAATCTTTTTGAGTGTAACATTAGAGTTCTTGGAGGACTTGTTTCTGCTCATTTACTGGCATCTGATTCTTCAAAAAACTTGCTTAAAGGATCTTACAAGAATCAGCTTCTAGGTCTGGCTGAAGATTTAGGGAAACGTTTTCTACCAGCGTTCGATACGCCTACTGGATTACCCTATGCATGGGTAAACTTAAAGTATGGAGTAATGGAGAATGAGACTACAGAAACAAGCACTTCCGGGTGTGGTTCTCTGATTCTTGAAATGGGAGCTTTATCAATAATGACTGGTGACCCTAGATATGAATCCGTAGCTCTACGAGCTCTCCGTAAGCTATGGAGTATGCAGAGCTCGTTAAAATTATTTGGAACCACTCTTGATGTGTCAACTGGGAAATGGATCGAACATTCTGCGGGAATTGGAGCTGGGGTAGATTCCTTCTATGAATATCTACTTAAAGCTCATATTCTTTTCGGGAAGGAGGACTATTGGAGAATGTTTCATTCTGCTTATGTTGCTGTGCAGAAGCATTTCAGACACGGTCCCTGGTACCATGAAGCTGACATGAGGACCGGAAGAGCAACTTATTGGCAACTTACAAGTCTTCAAGCATTTTGGCCAGGCCTACAGGTTCTTATTGGAGATATACCTGCTGCTAATTCATCGCACCGTGAGTTCTTCCATGTGTGGAAGCAATTTGGAGTGTTACCGGAGAGGTATTTACTGGACCATCAGATGCTTCATCCTACTGAAAAATATTATCCATTACGCCCCGAGTTTGCCGAGTCGACATTCTACTTATATCAAGCTACTAAAGATCCATGGTATATTGAAGTCGGCGAATTAATAGTCAATTCCCTTAATTTATACACCAGAGTAGAAGGCGGGTTCGCAAGCATCAAGGATGTAACAACTATGCAGTTGGAAGATCATCAACATAGTTTTTTTCTTGCTGAAACGTGTAAATATTTGTATCTTCTCTTCGATGATTCATTTATGCTCGAGAGTAATTACGTATTTACGACCGAAGGTCATCCACTTCCAGTACTAAGCACTTGGCATGAAGAGCTTCCAGAAGCTTATATTCCAACCAATTGGACCAACCTGAAGAGACCAAGACGAGCCAGTGCAATGTCTTTGCAAGTATGTCCTGCTATGACTTTAGATTCCGGTCAACATATAGAAAGTGCTTGCCATATCCCCGATGTTCGCAGTGATTACAAGTGTTTGACAGATGAAGATTGCGGAGTTGATTCAATAACCTGCAGAAGAAGATCATGTAGCATGGCTGGTTATTGTGGGCTATGGCTCTTCCTTTGA 1698 0.4252 MIPPRYYSACLLLFLLLLSTSLSQSHRAAKKKRMREKVRNMFHHAYDNYMTHAFPHDELKPLTKTFTDSLVELGNLKLERLPQDYNGSALSLIESLSSLVIMGNDTEFEKGVRWLSENLTFDVDARINLFECNIRVLGGLVSAHLLASDSSKNLLKGSYKNQLLGLAEDLGKRFLPAFDTPTGLPYAWVNLKYGVMENETTETSTSGCGSLILEMGALSIMTGDPRYESVALRALRKLWSMQSSLKLFGTTLDVSTGKWIEHSAGIGAGVDSFYEYLLKAHILFGKEDYWRMFHSAYVAVQKHFRHGPWYHEADMRTGRATYWQLTSLQAFWPGLQVLIGDIPAANSSHREFFHVWKQFGVLPERYLLDHQMLHPTEKYYPLRPEFAESTFYLYQATKDPWYIEVGELIVNSLNLYTRVEGGFASIKDVTTMQLEDHQHSFFLAETCKYLYLLFDDSFMLESNYVFTTEGHPLPVLSTWHEELPEAYIPTNWTNLKRPRRASAMSLQVCPAMTLDSGQHIESACHIPDVRSDYKCLTDEDCGVDSITCRRRSCSMAGYCGLWLFL* 566
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g1302 565 PANTHER ER DEGRADATION-ENHANCING ALPHA-MANNOSIDASE-LIKE PROTEIN 2 15 564 IPR044674 GO:0004571|GO:1904380|GO:1904382
Psa4g1302 565 Gene3D - 23 485 IPR012341 GO:0005975
Psa4g1302 565 PANTHER ALPHA-MANNOSIDASE I MNS5 15 564 - -
Psa4g1302 565 Pfam Glycosyl hydrolase family 47 41 474 IPR001382 GO:0004571|GO:0005509|GO:0016020
Psa4g1302 565 PRINTS Glycosyl hydrolase family 47 signature 41 61 IPR001382 GO:0004571|GO:0005509|GO:0016020
Psa4g1302 565 PRINTS Glycosyl hydrolase family 47 signature 126 144 IPR001382 GO:0004571|GO:0005509|GO:0016020
Psa4g1302 565 PRINTS Glycosyl hydrolase family 47 signature 176 195 IPR001382 GO:0004571|GO:0005509|GO:0016020
Psa4g1302 565 PRINTS Glycosyl hydrolase family 47 signature 267 284 IPR001382 GO:0004571|GO:0005509|GO:0016020
Psa4g1302 565 PRINTS Glycosyl hydrolase family 47 signature 324 340 IPR001382 GO:0004571|GO:0005509|GO:0016020
Psa4g1302 565 PRINTS Glycosyl hydrolase family 47 signature 381 405 IPR001382 GO:0004571|GO:0005509|GO:0016020
Psa4g1302 565 PRINTS Glycosyl hydrolase family 47 signature 440 460 IPR001382 GO:0004571|GO:0005509|GO:0016020
Psa4g1302 565 SUPERFAMILY Seven-hairpin glycosidases 32 476 IPR036026 GO:0004571|GO:0005509|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g1302 Psa-Chr4 92442622 92447248 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g1302 2 562 Glycoside Hydrolase AT1G27520 75.132 0.0 900
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g1302 K10084 - gmx:100793674 1014.22
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa4g1302 4 92442622 92447248 Psa4g1302 4 92442622 92447248 ECH