Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g1289 ATGGAATATCAAAGATCCTTCAGCAATGACTCTAATAACCTACAAAAAGAGTCACCTAACACATGCATTCTTTCTTCACAACACAGTCTCGCATCACTTCCTTCCCTCAACTCAAACTCAAACTCACAACTTCAAGATTCTTCCTTCACATGCATCACAACTCTGAAGCTCCACACTTGCATATCCTCTTTAGCCCTTGGAGGAAAATTCCTCTACACTGGTTCATCCAACAAAGAAATCACATCATGGAATAGTACACATTTTCATTCCCACCCTCAACAGTCAATTAACACAATAATTTCTGGAAACGGTGCTGTGAAATCAATAGTAATCCATTCCGACAAGCTTTTCACAGCTCATCAAGATAACAAAATCCGCATTTGGAAAATCACAATCACTCACGACGAACCTCAACAACAACAAAAGTTCACCCAACTAGCCACGCTCCCGACATTCACTGACCGTTTCACAACAATCTTGATCCCCAAAAACCATGTTAAGATTCGAAGGCACAAAAAGTGCACATGGATTCACCATGTTGACACAGTCTCTTCCCTTGCCTTATCCAAAGACGGAACCTTGTTGTACTCCGTTTCATGGGACAGAACAATCAAGGTTTGGAAAACCAAAGACTTCACATGTTTGGAATCAGTGCAAACTGCACACGACGATGCAATAAACGCAATCACAGTTTCTGATGATGGATATGTTTACACTGGATCAGCAGATAAAAAAATTAAGGTATGGAAGAAAGAAAAAGGCGATAAGAACCACCTGTTGGTAGATACACTGGAAAAACACAGGTCTGGTATTAATGCATTGGCCCTTAACAGTGATGGTTCGGTTTTGTATTCTGGTGCATGTGATAGATCAATATTGGTATCTGAGAGAGGTGGAAATGGTAATTTGGTTGTGAAGGGTGCGCTTCGTGGTCACACAAAGTCTATATTGTGTTTGGCAGTAGTTTCTGATTTGGTGTGCAGTGGTTCTGAGGATAAGACAATACGAATTTGGAGAAGCAATAGTACTAATAATGTTGATAGAGAGTATTGTTGTTTGGGTGTTTTAGAAGGACATAAAGGTCCAATTAAGTGCCTAACTGCAGTGCTTGATCATTTTGATGAACAATCATCGGATGCGACTTTTCTTATATATAGTGGCAGTTTGGACTGTGATATTAAGGTTTGGAAGATGTTACTTCCTCTTCAATGA 1212 0.3985 MEYQRSFSNDSNNLQKESPNTCILSSQHSLASLPSLNSNSNSQLQDSSFTCITTLKLHTCISSLALGGKFLYTGSSNKEITSWNSTHFHSHPQQSINTIISGNGAVKSIVIHSDKLFTAHQDNKIRIWKITITHDEPQQQQKFTQLATLPTFTDRFTTILIPKNHVKIRRHKKCTWIHHVDTVSSLALSKDGTLLYSVSWDRTIKVWKTKDFTCLESVQTAHDDAINAITVSDDGYVYTGSADKKIKVWKKEKGDKNHLLVDTLEKHRSGINALALNSDGSVLYSGACDRSILVSERGGNGNLVVKGALRGHTKSILCLAVVSDLVCSGSEDKTIRIWRSNSTNNVDREYCCLGVLEGHKGPIKCLTAVLDHFDEQSSDATFLIYSGSLDCDIKVWKMLLPLQ* 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g1289 403 ProSiteProfiles Trp-Asp (WD) repeats profile. 176 217 IPR001680 GO:0005515
Psa4g1289 403 Pfam WD domain, G-beta repeat 262 293 IPR001680 GO:0005515
Psa4g1289 403 Pfam WD domain, G-beta repeat 176 208 IPR001680 GO:0005515
Psa4g1289 403 Pfam WD domain, G-beta repeat 351 397 IPR001680 GO:0005515
Psa4g1289 403 Pfam WD domain, G-beta repeat 220 250 IPR001680 GO:0005515
Psa4g1289 403 Pfam WD domain, G-beta repeat 308 338 IPR001680 GO:0005515
Psa4g1289 403 Gene3D - 166 257 IPR015943 GO:0005515
Psa4g1289 403 SUPERFAMILY WD40 repeat-like 59 398 IPR036322 GO:0005515
Psa4g1289 403 ProSiteProfiles Trp-Asp (WD) repeats profile. 219 259 IPR001680 GO:0005515
Psa4g1289 403 PANTHER MYOSIN HEAVY CHAIN KINASE B-LIKE PROTEIN 1 402 - -
Psa4g1289 403 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 176 208 - -
Psa4g1289 403 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 219 250 - -
Psa4g1289 403 ProSiteProfiles Trp-Asp (WD) repeats profile. 309 348 IPR001680 GO:0005515
Psa4g1289 403 Gene3D - 258 401 IPR015943 GO:0005515
Psa4g1289 403 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 1 402 IPR045182 -
Psa4g1289 403 SMART WD40_4 92 129 IPR001680 GO:0005515
Psa4g1289 403 SMART WD40_4 48 84 IPR001680 GO:0005515
Psa4g1289 403 SMART WD40_4 211 250 IPR001680 GO:0005515
Psa4g1289 403 SMART WD40_4 169 208 IPR001680 GO:0005515
Psa4g1289 403 SMART WD40_4 302 339 IPR001680 GO:0005515
Psa4g1289 403 SMART WD40_4 257 296 IPR001680 GO:0005515
Psa4g1289 403 SMART WD40_4 349 397 IPR001680 GO:0005515
Psa4g1289 403 PRINTS G protein beta WD-40 repeat signature 195 209 IPR020472 -
Psa4g1289 403 PRINTS G protein beta WD-40 repeat signature 237 251 IPR020472 -
Psa4g1289 403 PRINTS G protein beta WD-40 repeat signature 326 340 IPR020472 -
Psa4g1289 403 Gene3D - 19 165 IPR015943 GO:0005515
Psa4g1289 403 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 309 338 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g1289 Psa-Chr4 90939202 90941276 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g1289 169 398 Miscellaneous Gene Families AT5G08390 24.051 1.28e-08 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g1289 - - gmx:100801906 514.227
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa4g1289 4 90939202 90941276 Psa4g1289 4 90939202 90941276 ECH