Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g1271 ATGAAGAGAGCGAGAACGGGAAAGGTTGATACCTTCTTCTTCTCGCTCTGTAGACAACGATCCTTCCAAATTCTCATCGTCATCGCTATTTTCTACGTTCTTTTGTTCATTCTCGAAATCCCCTTCGTTTTCAAAAACACCGCCACGCGCTCCGAGAGGTACGCGCTCGAGCAACAGCAACAATTTCAACCGAGTCAGTCTCAGGCCCACGGATTCTCTCGCCGCCGCAATCGCCGTTCGATTCTCTCTGGATTGCTACTGAACGACACCGCATTTGATTCCGAGGTTTATCAATCAGCGTACCGAGTTGGGAGGAGGGTTTGGGAGGAACTTGAATCGGGGAAAACGCCGATTCAAACCGGTGCCGTTTTGAAACCGGAGGAGGGGTTATGTCCGCAATCGGTGGATGTCTCCGGGGCGGATTTTGTGGGGAATGGGAGTTTGATGACGATTCCTTGTGGGTTGACGTTAGGGTCGCATATAACGGTGATTGGGATGCCGTTGGGGACACCGGAGGGTAAGAAGTCTCATTTTATTGTGGAGTTGCAGGGTTTGAAAACTGGTGAAGGTGAGGACCCACCTAGGATATTGCATTTCAATCCTAGGTTGAAAGGGGATTGGAGTAGGAAACCTGTGATTGAGCTTAATACTTGTTATAGGATGCAGTGGGGTACTTCTTTGAGATGTGATGGTTGGAAATCTAGGGCTGATCAAGATACTGTTGACGGGCTGGTGAAGTGTGAGAAGTGGATTGGGGGAGAATCCAGAGATGATAGACATGCAGTGGAGTATAAATCAGAATGGTGGTTGAAGAGACTCATAGGTCGGACAAAAAGAGTAACAGTTGATTGGCCATTCCCATTTAATGAGAACAAGCTATTTGTTCTTACTCTTAGTGCTGGATTGGAGGGCTACCATTTTAATGTTGATGGGAGGCATGTGACCTCCTTTCCTTATCGCACTGGCTTTACTCTTGAGGATGCTACTCGACTCACTGTAACCGGAGATATTGACGTCCATTCTATATTTGCTGCCTCCTTGCCTTCACTGCATCCTCGTATTTCTCCACAGCAGTATCTTGAATTTTCAACCAGATGGCGTGCCCCACCACTACCTGAGTTTGGGGTTGAATTGTTCATCGGCATCCTATCAGCTGGAAACCATTTCGCTGAGCGGATGGCTGTGAGAAAGTCGTGGATGCAGCATAGCCTTATCAAATCTTCAGAAGTGGTGGCTCGTTTCTTTGTAGCACTGCACCAGAGAATAGAAATTAATGCAGAGTTGAAAAAGGAAGCAGAATTTTTTGGAGATATTGTTATTGTGCCTTACATGGATAACTATGACCTTGTTGTGTTGAAAACAGTGGCTATATGTGAATATGGGGTTCATACAGCGGCTGCAGCTTACATCATGAAAGGTGACGATGACACGTTTGTGAGGGTGGACGCTGTTATAAATGAAGCAAGGAGTGTTCCAGATTTTATGAGCTCTTATATTGGGAATATAAATTATCATCACAAACCCTTGCGCCATGGTAAATGGGCTGTGACATATGAGGAGTGGCCAGAAGAGGATTACCCGCCATATGCTAATGGCCCGGGTTATATTCTGTCTTATGATATTGCACACTACATTGTTTCTGAATTTGAGAAGCATAAATTAAGGTTGTTTAAAATGGAAGATGTGAGCATGGGAATGTGGGTAGAGAAATTTAACAGCACAAAACAAGTGTACTATTCGCATAGTTTAATGTTCTGCCAGTTTGGGTGTATTGAAGGCTATTACACAGCCCATTACCAATCTCCAAGACAGATGGCGTGCCTTTGGGAAAAATTGCAGCGGCAAACAAGTCCTCTATGCTGCAACATGAGATAA 1875 0.4523 MKRARTGKVDTFFFSLCRQRSFQILIVIAIFYVLLFILEIPFVFKNTATRSERYALEQQQQFQPSQSQAHGFSRRRNRRSILSGLLLNDTAFDSEVYQSAYRVGRRVWEELESGKTPIQTGAVLKPEEGLCPQSVDVSGADFVGNGSLMTIPCGLTLGSHITVIGMPLGTPEGKKSHFIVELQGLKTGEGEDPPRILHFNPRLKGDWSRKPVIELNTCYRMQWGTSLRCDGWKSRADQDTVDGLVKCEKWIGGESRDDRHAVEYKSEWWLKRLIGRTKRVTVDWPFPFNENKLFVLTLSAGLEGYHFNVDGRHVTSFPYRTGFTLEDATRLTVTGDIDVHSIFAASLPSLHPRISPQQYLEFSTRWRAPPLPEFGVELFIGILSAGNHFAERMAVRKSWMQHSLIKSSEVVARFFVALHQRIEINAELKKEAEFFGDIVIVPYMDNYDLVVLKTVAICEYGVHTAAAAYIMKGDDDTFVRVDAVINEARSVPDFMSSYIGNINYHHKPLRHGKWAVTYEEWPEEDYPPYANGPGYILSYDIAHYIVSEFEKHKLRLFKMEDVSMGMWVEKFNSTKQVYYSHSLMFCQFGCIEGYYTAHYQSPRQMACLWEKLQRQTSPLCCNMR* 625
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g1271 624 PANTHER HYDROXYPROLINE O-GALACTOSYLTRANSFERASE GALT5 10 53 - -
Psa4g1271 624 PANTHER HYDROXYPROLINE O-GALACTOSYLTRANSFERASE GALT5 57 624 - -
Psa4g1271 624 SMART Gal_bind_lectin_2 151 344 IPR001079 GO:0030246
Psa4g1271 624 ProSiteProfiles Galactoside-binding lectin (galectin) domain profile. 147 345 IPR001079 GO:0030246
Psa4g1271 624 SUPERFAMILY Concanavalin A-like lectins/glucanases 149 343 IPR013320 -
Psa4g1271 624 Pfam Galactoside-binding lectin 148 343 IPR001079 GO:0030246
Psa4g1271 624 PANTHER BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASE 57 624 IPR002659 GO:0006486|GO:0016020|GO:0016758
Psa4g1271 624 PANTHER BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASE 10 53 IPR002659 GO:0006486|GO:0016020|GO:0016758
Psa4g1271 624 Pfam Galactosyltransferase 391 571 IPR002659 GO:0006486|GO:0016020|GO:0016758
Psa4g1271 624 CDD GLECT 150 343 IPR001079 GO:0030246
Psa4g1271 624 Gene3D - 147 343 - -
Psa4g1271 624 Gene3D - 375 620 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g1271 Psa-Chr4 89153316 89157089 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g1271 1 624 Glycosyltransferase AT1G74800 59.735 0.0 804
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g1271 K20843 - gmx:100800292 931.784
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa4g1271 4 89153316 89157089 Psa4g1271 4 89153316 89157089 ECH