Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g1223 ATGTCGACTCCGGCTAGGAAGAGACTGATGAGAGATTTTAAGAGGCTGCAACAAGATCCACCTGCAGGAATCAGTGGTGCGCCTCAGGATAACAACATCATGCTGTGGAATGCTGTCATATTTGGTCCTGATGATACTCCATGGGATGGAGGCACGTTTAAGTTGACTCTTCAATTTTCTGAGGATTATCCAAACAAGCCACCCACTGTACGATTTGTCTCCCGAATGTTTCATCCAAACATTTATGCTGATGGAAGTATTTGTCTGGATATATTGCAAAATCAGTGGAGTCCTATATATGATGTAGCTGCAATTCTCACTTCTATCCAGTCATTGCTTTGTGATCCCAATCCAAATTCTCCTGCAAACTCTGAAGCAGCACGGATGTACAGTGAAAACAAGCGCGAGTACAATAGAAGAGTCCGGGAGACTGTGGAGCAGAGTTGGACAGCGGACTAA 459 0.4444 MSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFSEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMYSENKREYNRRVRETVEQSWTAD* 153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g1223 152 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 77 92 IPR023313 -
Psa4g1223 152 SUPERFAMILY UBC-like 1 150 IPR016135 -
Psa4g1223 152 MobiDBLite consensus disorder prediction 120 152 - -
Psa4g1223 152 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 2 1 152 - -
Psa4g1223 152 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 1 152 - -
Psa4g1223 152 Gene3D Ubiquitin Conjugating Enzyme 1 148 IPR016135 -
Psa4g1223 152 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 4 150 IPR000608 -
Psa4g1223 152 Pfam Ubiquitin-conjugating enzyme 8 144 IPR000608 -
Psa4g1223 152 MobiDBLite consensus disorder prediction 129 146 - -
Psa4g1223 152 CDD UBCc 7 145 IPR000608 -
Psa4g1223 152 SMART ubc_7 7 150 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g1223 Psa-Chr4 86376887 86380152 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g1223 7 120 Miscellaneous Gene Families AT1G17280 31.092 4.87e-16 70.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g1223 K10573 - egr:104419230 316.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa4g1223 4 86376887 86380152 Psa4g1223 4 86376887 86380152 ECH