Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g1199 ATGAATATGAACGTTAGCAAGAGGTTGGAAGAAGGTTTGGTTTCATTGTTGAGCAAAAGCACCACCACCCTCAAAACATCCAAACAAACTCACGCTCATCTCTACGTAACTGGCCTTCACACTCACCCCTTCTTCTTCGGCAAGCTCCTTCTCCAATGCGCAATCTCCATCTCCGACCATGCTCTCCAATACGCTCTCCGTCTCTTTCACCACTTCCCCAGCCCCGACACTTTCATGTACAACACCATCATCCGTTCACTCTCTCATTCTTCCACCCCTCTCACTTCCCTACAACCCTTTATCCAATTACTTCGCCACCCCACTCTCTTCCCTGATAGTTTCTCCTTCGCTTTTGTACTCAAAGGGGTTGCTAACTATGGTTACTTGAAGAGACCCGGCATTCAGTTACATTCTCAGGCTTTTCGTCATGGGTTTGATGACCATATATTTGTTGGAACGACTTTGATTAGTATGTATGCTGAATGTGGGTGTTATGTGTCTGCAAGAAAGGTGTTTGAGGAAATGTCTCAACCGAATGTTGTTGCGTGGAATGCTGTTGTTACTGCTTGTTTTAGGTGTGGGGATATGGAGGGTGCTTGGGGTGTGTTTCAAAGGATGCCTATTAGGAATCTGACTTCTTGGAATGTGATGCTTGCGGGTTATGTTAAAGGCGGTGAGCTTGGGTTTGCGAGAAGAGTTTTTTCTGAAATGCCGATGAGAGATGATGTTTCTTGGAGTACTATGATTGTTGGGTTTGCTCAAGGTGGTTCTTTTGATGATTCTTTTGGGTTTTTTAGGGAGTTGCTGCGGGAGGGAATTAGGCCGAGTGAGGTTAGTCTCACTGGGGTTTTATCTGCTTGTGCTCAGGCTGGGGCGTTTGAGTTTGGTAAGATTTTGCATGGGTTTATGGAGAAAGCTGGGGTTCTTTGTATTGTTTCGGTTAATAATGCTCTCATTGATAGTTACTCCAAGTGTGGAAATGTTGATATGGCTAAGATGGTCTTTCAAAATATGCCTGTTGTGAAGTGCACTGTGTCTTGGACATCTATGATAGCAGCACTTGCAATGCATGGTCGTGGAGAGGAGGCCATCCGACTTTTTCATGAGATGGAAAAGTCTGGATTTACACCGGACGGTATCACGTTTATATCTCTCCTTTATGCTTGTAGCCATAGTGGTTTGGTTGATCAAGGGTGTGCTTTGTTTTCTAAGATGAAGGATTTGTATGGAATTGAACCTGCCATTGAGCATTATGGTTGTATGGTTGATCTGTATGGTCGAGCTGCTAGGTTGCAGAAGGCCTATGAATTTATATGTCAGATGCCAATTTCGCCTAATGCAATCATTTGGAGGACCCTCCTCGGGGCTTGTAGCATTCATGGTAACATCGAATTGGCAGAGCTTGTGAAGGCAACGCTTGCTGAAATGGATCCAAACAACTCCAGTGACCATGTACTGCTCTCAAATGTTTACGCGGTTGCAGGGAAATGGAAGGATGTTGCTGGCATAAGAAGAACAATGATTGAGAAGAGCATGAAAAAAACTCCTGGTTGGAGTATGATTGAAATTGACAAGGTCATTTATGGTTTTGTGGCAGGTGAAAAGCCTAACGAGGTTACAGAAGAGGCCCATGATAAACTGAGAGAAATAATGTCGAAACTCAGAACAGAAGAAGGTTATGCGCCTCAGGTAAGAAGTGTTTTGCATGATATTGAAGAGGAAGAAAAAGAAGATTCAGTGACCAAGCACAGTGAGAAGCTTGCTGCAGCTTTTGGAATAGCAAAACTTCCTAAAGGAAAGGTTATAAGAATAGTGAAGAACCTGAGAGTTTGTGGGGACTGCCATACTGTAATGAAGTTGATTTCTAAAGTCTATCAAGTAGAAATCGTTGTGAGAGATAGAAGCCGCTTTCACTCATTCAAAGATGGATTTTGTTCCTGCAGAGATTACTGGTGA 1956 0.4351 MNMNVSKRLEEGLVSLLSKSTTTLKTSKQTHAHLYVTGLHTHPFFFGKLLLQCAISISDHALQYALRLFHHFPSPDTFMYNTIIRSLSHSSTPLTSLQPFIQLLRHPTLFPDSFSFAFVLKGVANYGYLKRPGIQLHSQAFRHGFDDHIFVGTTLISMYAECGCYVSARKVFEEMSQPNVVAWNAVVTACFRCGDMEGAWGVFQRMPIRNLTSWNVMLAGYVKGGELGFARRVFSEMPMRDDVSWSTMIVGFAQGGSFDDSFGFFRELLREGIRPSEVSLTGVLSACAQAGAFEFGKILHGFMEKAGVLCIVSVNNALIDSYSKCGNVDMAKMVFQNMPVVKCTVSWTSMIAALAMHGRGEEAIRLFHEMEKSGFTPDGITFISLLYACSHSGLVDQGCALFSKMKDLYGIEPAIEHYGCMVDLYGRAARLQKAYEFICQMPISPNAIIWRTLLGACSIHGNIELAELVKATLAEMDPNNSSDHVLLSNVYAVAGKWKDVAGIRRTMIEKSMKKTPGWSMIEIDKVIYGFVAGEKPNEVTEEAHDKLREIMSKLRTEEGYAPQVRSVLHDIEEEEKEDSVTKHSEKLAAAFGIAKLPKGKVIRIVKNLRVCGDCHTVMKLISKVYQVEIVVRDRSRFHSFKDGFCSCRDYW* 652
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g1199 651 PANTHER - 17 592 - -
Psa4g1199 651 TIGRFAM PPR: pentatricopeptide repeat domain 243 277 IPR002885 -
Psa4g1199 651 TIGRFAM PPR: pentatricopeptide repeat domain 345 378 IPR002885 -
Psa4g1199 651 TIGRFAM PPR: pentatricopeptide repeat domain 181 207 IPR002885 -
Psa4g1199 651 TIGRFAM PPR: pentatricopeptide repeat domain 316 340 IPR002885 -
Psa4g1199 651 TIGRFAM PPR: pentatricopeptide repeat domain 213 244 IPR002885 -
Psa4g1199 651 Pfam PPR repeat family 342 390 IPR002885 -
Psa4g1199 651 PANTHER OS01G0913400 PROTEIN-RELATED 17 592 - -
Psa4g1199 651 Pfam E motif 460 522 IPR046848 -
Psa4g1199 651 Gene3D Tetratricopeptide repeat domain 95 210 IPR011990 GO:0005515
Psa4g1199 651 Coils Coil 537 557 - -
Psa4g1199 651 Pfam DYW family of nucleic acid deaminases 559 651 IPR032867 GO:0008270
Psa4g1199 651 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 179 213 IPR002885 -
Psa4g1199 651 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 343 377 IPR002885 -
Psa4g1199 651 Gene3D Tetratricopeptide repeat domain 393 590 IPR011990 GO:0005515
Psa4g1199 651 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 241 275 IPR002885 -
Psa4g1199 651 Gene3D Tetratricopeptide repeat domain 298 392 IPR011990 GO:0005515
Psa4g1199 651 Gene3D Tetratricopeptide repeat domain 211 297 IPR011990 GO:0005515
Psa4g1199 651 Pfam PPR repeat 316 339 IPR002885 -
Psa4g1199 651 Pfam PPR repeat 243 273 IPR002885 -
Psa4g1199 651 Pfam PPR repeat 153 176 IPR002885 -
Psa4g1199 651 Pfam PPR repeat 417 441 IPR002885 -
Psa4g1199 651 Pfam PPR repeat 213 239 IPR002885 -
Psa4g1199 651 Pfam PPR repeat 181 207 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g1199 Psa-Chr4 85377979 85380970 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g1199 59 651 Glycoside Hydrolase AT3G49170 33.385 8.20e-116 364
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g1199 - - lja:Lj4g3v1632020.2 1058.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa4g1199 4 85377979 85380970 Psa4g1199 4 85377979 85380970 ECH