Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g1165 ATGGGTCCACCTCCTCTCAGTGATGATCGTTCGGAAATTGTATTCTTCGACGTAGAAACCACCGTTCCGACCCGACCCGGTCAGGGTTTTGCAATTTTAGAATTCGGAGCAATTCTGGTATGTCCAAGGAAACTGACGGAGCTTCGAAACTACTCCACTCTGGTCAGACCCGCTGATCTTTCACTCATCACTCCGTTATCGGAGCGCTGTAACGGAATCAACGCTGAAGCTGTTTCGTCCGCTCCTACGTTCGCCGACATCGCTCACGCCGTTTATGATCTTCTTCACGGGAGGATTTGGGCGGGTCACAATATTTTAAGATTTGACTGTGTTAGGGTTAAAGATGCATTTGCTGCGATTAATCAAACACCGCCTGAACCAAAAGGCACGATTGATTCTTTGCTTTTGTTGACTCAGAAGTTTGGAAGAAGAGCTGGTAACATGAAGATGGCTACTCTTGCTACCTATTTTGGTCTTGGGCAGCAGACACACAGGAGCTTAGATGATGTTCGGATGAATCTAGAAGTTCTCAAATACTGTGCAACAGTTCTATTCTTGGAGTCAAGTCTCCCAGATATATTCACTGAAAATAGTTGGGTTTCACCAAATGCAGTTACAAGAAGTCGCAGTAATGGGAAATCGCGGTCAGAAGGGGGTTTGTTAAATATGAATAAGGATTCTGTGTCAGTATCATCTCCTGAAACTGCAGATAAATATCATCCAATCCTTTCTCTTGCAACAAGCAGCACAAACGTGGATGTCCCAAATGTTGGAGATTCTTTTAACTTTCGTGATCTTCAGGATGAAGTTAATAGGGAATCCGTTAGGGCAGATGTTGCGATGAATGAAACATCCATACCATCACCTGATTCTGCAACCTCATTATCTGTGCTTCAGACTAGCAGCAGCTCTATTGTTGTTTTGGAGCCCGAAAAAATATCTATTCCTTCTATTGATGCGTCTCTTGTTCCATCTTACCATGGCAGTCGAAGGATAGAATTACTTCATGAAGGTTTCCCATTTCAGCTTCTTTGTTCTGGTTTGAAAGTGCGGTTTGGAATAAGCACAAAGTTTGTTGATAGTGCTGGCCGGCCACGGCTAAGCTTTGTGGTTGATCCATCACCAAGTTTATGCAATGTTCTTGAAGCATGCGACAATGTTGCACGTAAGTTATCCGCAGAATCTGGTGGCGGCTCTGATTGGAGGCCAGTTGTTATCAGGAAAGAGGGCTTCTACAACTATCCTACCATCAGATTGCATATACCTACAGCAGTATGCGGAGAGATTGCCATTTATGCAACAGAAATATACCAAAAAGAATCATCTGGATCTGTACAAAGACTTCTCTTCAGCAAGTTCGACGCCGAAGAGCTTGGTGCCATGTTCAAGCCTGGGACATTTGTTGATGCGGTCTTCTCCTTAGATCTGTATGACTATCATCAGAATGCAGGGATTAAATTAGTTGCCAAAAAATTGATCATTCATTGCAAGTAG 1494 0.4357 MGPPPLSDDRSEIVFFDVETTVPTRPGQGFAILEFGAILVCPRKLTELRNYSTLVRPADLSLITPLSERCNGINAEAVSSAPTFADIAHAVYDLLHGRIWAGHNILRFDCVRVKDAFAAINQTPPEPKGTIDSLLLLTQKFGRRAGNMKMATLATYFGLGQQTHRSLDDVRMNLEVLKYCATVLFLESSLPDIFTENSWVSPNAVTRSRSNGKSRSEGGLLNMNKDSVSVSSPETADKYHPILSLATSSTNVDVPNVGDSFNFRDLQDEVNRESVRADVAMNETSIPSPDSATSLSVLQTSSSSIVVLEPEKISIPSIDASLVPSYHGSRRIELLHEGFPFQLLCSGLKVRFGISTKFVDSAGRPRLSFVVDPSPSLCNVLEACDNVARKLSAESGGGSDWRPVVIRKEGFYNYPTIRLHIPTAVCGEIAIYATEIYQKESSGSVQRLLFSKFDAEELGAMFKPGTFVDAVFSLDLYDYHQNAGIKLVAKKLIIHCK* 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g1165 497 Gene3D - 6 184 IPR036397 GO:0003676
Psa4g1165 497 Pfam Exonuclease 14 177 IPR013520 -
Psa4g1165 497 PANTHER DNA POLYMERASE III SUBUNIT EPSILON 6 496 - -
Psa4g1165 497 CDD DEDDh 14 178 - -
Psa4g1165 497 SMART exoiiiendus 12 186 IPR013520 -
Psa4g1165 497 PANTHER PROTEIN NEN3 6 496 - -
Psa4g1165 497 SUPERFAMILY Ribonuclease H-like 11 182 IPR012337 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g1165 Psa-Chr4 83179227 83182271 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g1165 - - ccaj:109808157 766.533
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa4g1165 4 83179227 83182271 Psa4g1165 4 83179227 83182271 ECH