Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g1113 ATGGCAATGCAGGAAGCGAGTGCTTCTCCTAGTCCTCAAGTTGTTGGAAATGCCTTTGTGGAGCAATATTATCATATTCTGCATCAATCTCCTGACTTGGTGCACAGATTCTATCAGGATTCGAGTCTTTTAAGCAGATCAGACAGCAATGGCGTCATGAAGACTGTAACAACCACAAAAGCAATCAACGAAACAATTGTTTCCCTGAACTATGAAGATTGTACTGCAGAAATAAAAACTGCGGATACTCAGGAGTCCCATGAGAATGGTGTGATAGTTTTAGTAACTGGATGCTTAACTGGGAAGGATAACGTGAGAAGGAAGTTCTCACAGACTTTCTTTTTGGCTCCACAAGACAAAGGATATTATGTCTTAAATGACGTTTTTAGATATATTGAAGAGAATGATGCCCCGCAGTTCAATTCGGCTTCAATATATGTCACCAATGAAAATTCCGAGGCAATTCACATCGTACCGGAGCCAGAGGATGTGCACCCTTCCGAACATCTTGTGGAAGACCCTGCAACATCTGTAGAGGGTGAAAACCTTAATAATGTTGCCGAAGTTTATCATCCTCAGGAAACTAAGGAAGATGGGTCGGTTATTGATGAAGAGGTTGTCGTACCAATCACTGATTTAAGTGAGAATGATATTGTTACAATTCATGATTCAGCTCCTGCACTCCAGGATGACCCACGAAAGACTTCTTATGCATCCATAGTAATGAAAAGTAAAACAGCATCTGGTCATGTTTATGTTCCCAACCGAGCTGCAAGAGTGGCATCTGCTAAATCAAATGAACAATGGCATGCTACCGCAAGATCTACTCCTAGGCCTGAGGCATTCGCTCCTAGTAGTGATAGTACACAAGGGAGTAGTGATGTTCCTGAAGCAGCTGAAGGTCATTCCATATACATACGGAACTTGCCATTTAATGCAACAATTGAACTTCTTGATGAGGTTTTTAAGAAATTCGGTCCTATTAAGCATGGTGGAGTCCAAGTAAGAAGCAGTAAGCATGGTTTTTGTTTTGGCTTTGTTGAATTCGAGGATTTGAGCTCTGTGCACAGTGCACTTAAGGCATCACCTATCACTGTTGGTGAGCGACAGGCTGTTATTGAGGAAAAGATATCCACTACACGGGTCAGCGATGGCGGAAGAGGGAGGTATCCTTCAGGAAGAGGTGGTTTCCGAAACGAGGGTTTCCGGGGGCGCGGGAGATTTGGTGGTGGACGAGGTTATGGAAGAAACGAATTCAGAAACCAAGGGGAATTCTCAGGACGGCCTAGGAGTTCTCATCGTCCAAGTCAAAATGGAGGTGGGCGTGGTGGACGTCATGGTGCAGGGAACCATAATGTTACACCATCTCCTTCAGAGTGA 1380 0.4391 MAMQEASASPSPQVVGNAFVEQYYHILHQSPDLVHRFYQDSSLLSRSDSNGVMKTVTTTKAINETIVSLNYEDCTAEIKTADTQESHENGVIVLVTGCLTGKDNVRRKFSQTFFLAPQDKGYYVLNDVFRYIEENDAPQFNSASIYVTNENSEAIHIVPEPEDVHPSEHLVEDPATSVEGENLNNVAEVYHPQETKEDGSVIDEEVVVPITDLSENDIVTIHDSAPALQDDPRKTSYASIVMKSKTASGHVYVPNRAARVASAKSNEQWHATARSTPRPEAFAPSSDSTQGSSDVPEAAEGHSIYIRNLPFNATIELLDEVFKKFGPIKHGGVQVRSSKHGFCFGFVEFEDLSSVHSALKASPITVGERQAVIEEKISTTRVSDGGRGRYPSGRGGFRNEGFRGRGRFGGGRGYGRNEFRNQGEFSGRPRSSHRPSQNGGGRGGRHGAGNHNVTPSPSE* 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g1113 459 Pfam Nuclear transport factor 2 (NTF2) domain 15 131 IPR002075 -
Psa4g1113 459 ProSiteProfiles Nuclear transport factor 2 domain profile. 15 131 IPR018222 -
Psa4g1113 459 PANTHER RAS GTPASE-ACTIVATING BINDING-LIKE PROTEIN 2 450 - -
Psa4g1113 459 CDD RRM_SF 304 361 - -
Psa4g1113 459 MobiDBLite consensus disorder prediction 263 297 - -
Psa4g1113 459 CDD NTF2 11 133 IPR018222 -
Psa4g1113 459 Gene3D - 283 383 IPR012677 -
Psa4g1113 459 SUPERFAMILY NTF2-like 11 132 IPR032710 -
Psa4g1113 459 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 302 387 IPR000504 GO:0003723
Psa4g1113 459 MobiDBLite consensus disorder prediction 263 296 - -
Psa4g1113 459 MobiDBLite consensus disorder prediction 381 459 - -
Psa4g1113 459 SUPERFAMILY RNA-binding domain, RBD 300 408 IPR035979 GO:0003676
Psa4g1113 459 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 304 361 IPR000504 GO:0003723
Psa4g1113 459 PANTHER RAS GTPASE-ACTIVATING PROTEIN-BINDING PROTEIN 2 450 IPR039539 -
Psa4g1113 459 SMART rrm1_1 303 374 IPR000504 GO:0003723
Psa4g1113 459 MobiDBLite consensus disorder prediction 424 438 - -
Psa4g1113 459 Gene3D - 3 135 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g1113 Psa-Chr4 80758178 80762894 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g1113 K24983 - gmx:100801253 657.907
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa4g1113 4 80758178 80762894 Psa4g1113 4 80758178 80762894 ECH