Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g1110 ATGAGGTGGGAAAAGATTGAGGTTAAGGCGATAGGAAGAGAGGGTGAAGGTGTAGTAGAACTCGTATCTGGCCCAGGCAAAAGGTGGGGTCACACCTGTAACTCCATTAATGGTGGTAGACATATCTATGTCTTTGGTGGTTATGGTAAAGATAACTGCCAAACTAATCAAGTTCATGTCTTTGACACTGTGAACCAGACATGGAGCCAACCTGAAATAAAAGGCTCCCCACCTACTCCTAGGGACAGTCACACTTGCAGTGTTATTGGTCATAAACTGTTTGTGTTTGGGGGTACTGATGGAATCAATCCACTCAAGGATTTGCATATTTTAGACACTTCTTTGCAAACATGGGATTCTCCGATTATAAGAGGGCAAGGGCCAGAGGCACGGGAGGGTCATAGCGCAGCTGTTGTTGGGAAACGGCTTTACATTTTTGGTGGTTGTGGAAAATCGGCTGATAATAACAATGAGGTCTACTACAATGATCTTTACATACTGAATACAGAGACGCTTGTTTGGATGCGCCCTACAACATCAGGCACACCACCATCTCCTCGTGATAGCCACACTTGCTCATCGTGGAAGAACAAAATTATTGTGATAGGGGGTGAAGATGGACATGATTATTATTTGTCTGATGTCCATATCCTTGACACTGATACTCTAATGTGGAGGGAGCTGAGTACATCAGGCCAATTGTTACTACCTCGGGCTGGTCATTCCACAGTTTCTTTTGGCAAGAACTTGTTCGTTTTCGGTGGATTTACAGACGCCCAAAATCTATACAATGACCTTTATATGCTTGATGTTGATACTGGTATTTGGACAAACGTTACAACTACAACCAATTGTCCTTCTGCTAGATTTTCTGTAGCTGGTGACTGTTTAGACCCATTTAAGGGCGGTGTTCTTGTGTTCATCGGCGGTTGTAATAAAAGTCTTGAAGCCTTGGATGATATGTATTACCTATATACAGGTATTGCTAAGGAAAGTGAACAGAGACTAGAGAAGTTATCTATGAAGAAGCAATTGAAGCTGAAATGCCAAGAAGAACAAAATCTCATTCCTGGCCAAAATCAAGTTATGGTTGGATATGGAGTGGGTGCTGATATTGGCCAGGTCATGAGTGTGTTGAATTATAGCCAGCCAAATAGAACAAATATCCCAGTAAATCAATTGCTGCCTTCTCATGGAAAGAAATCATTTGAAGCCAAGGTTACTGAAAACATCTCAGAGGGATATACTATTGAAACTGTTATTGACGGAAAGCCTCTTCGTGGAGTTCTGTTTTTAAACAAACAAAACCCTCTTCACCCATCTGCTCATGCTCTTAGTAGCAGGAAAAGGACTGCTGGTGAAGTTGATGGTGTCACCTCAAATGGTACACATTCAAATATATTGAAGACCCCTAAAGTGCTTAAGCAAAATCAAATGGAAAATCGACATCCAGAATCCCTCGGTCACAGTTCTGATGCTGTCGTTGCACTTGCAGCAAGCAATCCAATAACTGCCAATGCATCTGTTAACCATAAGGTTGAACCAGAAGCTGCTTCTTTGAATCAAAATGCTGAAAAAATTGAAACACCAACCTTGGGGGAAACCTTGAAAAATGATGGAGCAAATCATCCAACCTTGGGGGAAACCTTGAAAAATGATGGAGCAAATCATGTGACAAATTCCAGAGTTGAAGCCCAAACAAATGTTCAAACAATTGCGGTGATTCCTAACTTAGAACCTTCAAGTCATGATAAAAATAATGATGCACCAAACTGCAACACAGAATTTCTGAAACCTGTCACAACTGAGAGTGCTGTGAATTTTTCAAATCAAGGTGCAGTGGTGGATTCTACAACTCCAAGAACAGGAGAGTGCAGCGAACCAACAAAATGA 1893 0.4157 MRWEKIEVKAIGREGEGVVELVSGPGKRWGHTCNSINGGRHIYVFGGYGKDNCQTNQVHVFDTVNQTWSQPEIKGSPPTPRDSHTCSVIGHKLFVFGGTDGINPLKDLHILDTSLQTWDSPIIRGQGPEAREGHSAAVVGKRLYIFGGCGKSADNNNEVYYNDLYILNTETLVWMRPTTSGTPPSPRDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLMWRELSTSGQLLLPRAGHSTVSFGKNLFVFGGFTDAQNLYNDLYMLDVDTGIWTNVTTTTNCPSARFSVAGDCLDPFKGGVLVFIGGCNKSLEALDDMYYLYTGIAKESEQRLEKLSMKKQLKLKCQEEQNLIPGQNQVMVGYGVGADIGQVMSVLNYSQPNRTNIPVNQLLPSHGKKSFEAKVTENISEGYTIETVIDGKPLRGVLFLNKQNPLHPSAHALSSRKRTAGEVDGVTSNGTHSNILKTPKVLKQNQMENRHPESLGHSSDAVVALAASNPITANASVNHKVEPEAASLNQNAEKIETPTLGETLKNDGANHPTLGETLKNDGANHVTNSRVEAQTNVQTIAVIPNLEPSSHDKNNDAPNCNTEFLKPVTTESAVNFSNQGAVVDSTTPRTGECSEPTK* 631
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g1110 630 Pfam Kelch motif 128 171 - -
Psa4g1110 630 SUPERFAMILY Galactose oxidase, central domain 19 229 IPR011043 -
Psa4g1110 630 SMART kelc_smart 92 141 IPR006652 GO:0005515
Psa4g1110 630 SMART kelc_smart 41 91 IPR006652 GO:0005515
Psa4g1110 630 SMART kelc_smart 198 248 IPR006652 GO:0005515
Psa4g1110 630 SMART kelc_smart 249 295 IPR006652 GO:0005515
Psa4g1110 630 Gene3D - 7 175 IPR015915 GO:0005515
Psa4g1110 630 Pfam Galactose oxidase, central domain 40 89 - -
Psa4g1110 630 PANTHER KELCH REPEAT DOMAIN 17 453 - -
Psa4g1110 630 Gene3D - 176 331 IPR015915 GO:0005515
Psa4g1110 630 Pfam Kelch motif 186 230 IPR011498 GO:0005515
Psa4g1110 630 Pfam Galactose oxidase, central domain 237 286 - -
Psa4g1110 630 PANTHER GALACTOSE OXIDASE/KELCH REPEAT SUPERFAMILY PROTEIN 17 453 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g1110 Psa-Chr4 80655577 80661639 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g1110 55 314 Acyl Lipid Metabolism Gene Families AT3G05420 30.292 2.22e-26 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g1110 - - cam:101509662 1009.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa4g1110 4 80655577 80661639 Psa4g1110 4 80655577 80661639 ECH