Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g1033 ATGTCAAAGGTTAAAGCTGATCAACTTAATCAGTTAAGAGAAATCTTCAGACGATTCGACATGGATTCAGATGGAAGCCTAACAATGTTAGAGTTAGCAGCACTTATTCGTTCATTAGGTCTGAAACCTTCAGGTGACCAAGTTCAAGTCATGTTATCAAAGATGGACTCAAACAGAAACGGTTCTGTTGAGTTTGATGAATTAGTAGGAGCCATAATGCCAAACATGATGAATGAAGAGGTATTAGTGAATCAAGAACAACTCATAGGTGTGTTTAAGTGCTTTGATCGTGATGGAAATGGTTATATTTCAGCTGCTGAATTGGCTGGAGCTATGGCTAAAATGGGTCAGCCTCTTACATATAAAGAGCTTAGAGAGATGATTAAAGAAGCTGATATGGATGGTGATGGTGTTATTAGTTTTACTGAGTTTGCTACTATTATGGCTAATTCTGCTTCTGATTTATTAGGAGAGTTTTGTCATAGAAACAAAACACATTCCTTTCAATTTTAA 513 0.3626 MSKVKADQLNQLREIFRRFDMDSDGSLTMLELAALIRSLGLKPSGDQVQVMLSKMDSNRNGSVEFDELVGAIMPNMMNEEVLVNQEQLIGVFKCFDRDGNGYISAAELAGAMAKMGQPLTYKELREMIKEADMDGDGVISFTEFATIMANSASDLLGEFCHRNKTHSFQF* 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g1033 170 ProSitePatterns EF-hand calcium-binding domain. 132 144 IPR018247 -
Psa4g1033 170 ProSitePatterns EF-hand calcium-binding domain. 20 32 IPR018247 -
Psa4g1033 170 ProSitePatterns EF-hand calcium-binding domain. 56 68 IPR018247 -
Psa4g1033 170 ProSiteProfiles EF-hand calcium-binding domain profile. 43 78 IPR002048 GO:0005509
Psa4g1033 170 PANTHER CALCIUM-BINDING PROTEIN CML15-RELATED 3 158 - -
Psa4g1033 170 ProSiteProfiles EF-hand calcium-binding domain profile. 7 42 IPR002048 GO:0005509
Psa4g1033 170 ProSiteProfiles EF-hand calcium-binding domain profile. 119 154 IPR002048 GO:0005509
Psa4g1033 170 CDD EFh 87 149 IPR002048 GO:0005509
Psa4g1033 170 Gene3D - 1 77 - -
Psa4g1033 170 ProSiteProfiles EF-hand calcium-binding domain profile. 83 118 IPR002048 GO:0005509
Psa4g1033 170 Pfam EF-hand domain pair 10 71 IPR002048 GO:0005509
Psa4g1033 170 Pfam EF-hand domain pair 86 148 IPR002048 GO:0005509
Psa4g1033 170 Gene3D - 78 166 - -
Psa4g1033 170 ProSitePatterns EF-hand calcium-binding domain. 96 108 IPR018247 -
Psa4g1033 170 SMART efh_1 87 115 IPR002048 GO:0005509
Psa4g1033 170 SMART efh_1 11 39 IPR002048 GO:0005509
Psa4g1033 170 SMART efh_1 47 75 IPR002048 GO:0005509
Psa4g1033 170 SMART efh_1 123 151 IPR002048 GO:0005509
Psa4g1033 170 SUPERFAMILY EF-hand 4 148 IPR011992 -
Psa4g1033 170 PANTHER CALCIUM BINDING PROTEIN 3 158 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g1033 Psa-Chr4 76642569 76644331 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g1033 7 157 EF-hand Containing Proteins AT1G18530 76.159 1.85e-81 236
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g1033 K13448 - gmx:100795885 255.373
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa4g1033 4 76642569 76644331 Psa4g1033 4 76642569 76644331 ECH