Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g1014 ATGGATGAAAATTTCGACGCCTTTGATAATAAACTCCCCGAGCTCAAATTAGATTCTAAGCAAGCGCAAGGGTTTCTGTCCTTTTTCAAAACCCTATCTGATGACCCGAGGGCCATTAGATTTTTTGATCGTCGGGATTACTATACTGCCCATGGTGAAAATGCAACATTCATTGCCAAAACCTACTATCACACTACTACTGCTCTACGACAATTGGGTAGTGGATCAAATGCTCTTTCCAGTGTGAGTGTCAGTAGGAACATGTTTGAAACAATTGCCCGTGATCTACTCTTGGAGAGAACAGACCATACACTTGAGGTCTATGAGGGCAGCGGCTCTAACTGGAGACTGGTCAAAAGTGGTACACCTGGTAATATTGGCAGTTTTGAAGATGTTCTGTTTTGCTACAGTGAATGCGCGGATTCTCCAGTTGTTGTTGCACTGTCACTTAACTTCCGTGAAAGTGGGTGCACCGTTGGATTAGGATTTGTTGGTCTAACTAAGAGACTACTAGGGATGGCTGAATTTCTTGATGACAGTCACTTCACAAATCTGGAGCTTGTCAAAGGTTCTATTGAAGCAGTTCAAGATTTAGTTTCTGGATTTGAATTTGCACCTGGTGCTTTGGGGGCACTGCTCTCTTATGCAGAGTTACTTGCAGACGAAAGCAATTATGGAAATTATACTCTGCGTCGGTACAATCTTGATAGTTACATGAGAACCTGTACAGCTGGAATGGGAAAACGGTTATTGCACATGTGGCTAAAGCAGCCATTATTAGATGTAAAAGAAATTAACTTGAGGTTGGATGTAGTACAAGCATTTGTAGAGGACACCGTGCTTCGGCAAGATCTGAGGCAGCATCTGAAAAGAATGTCAGACATTGAGCGACTGGTGCACAATCTTCAGAAGCGAAGAGCTGGTTTGCAACATGTTGTTAAACTATATCAGTCAAGTATAAGATTGCCTTACATTAAAGGTGCCCTGGATAGGTATGATGGACAGTTTTCTTCAATGATGAAGAGCAGGTATTTGAAAGATTTGGAGTTATGGACTGGTGTTGATCGCCTAAATAAATTTATTGAGCTTGTAGAAACTGCTGTTGACCTTGATCATCTGGAGAACGGGGAATACATGATTTCTTCAAGTTATGACACTGCACTATCTGAACTTAAGGAGAAGCAAGAATTACTAGAGAGTCAAATACATAACTTGCATAAACAAACTGCTGATGATCTTGATCTGCATATAGATAAGACATTAAAGTTAGATAAGGGCACACAATTTGGACATGTTTTTAGAATCACAAAGAAGGAAGAGCCAAAAATAAGAAAGAAGCTCAACACCCAATTTATTGTACTTGAAACCCGTAAAGATGGAGTGAAGTTTACTAACACAAAGCTCAAAAAATTGGGAGACAAATATCAACAAATTCTTGAGGACTACAAGAGCTGTCAAAAACAGTTGGTTATTAAAGTGTTTGAATCTTTAGCTGCATTAATTTCCGAATTGGATGTGTTACTAAGCTTTGCTGATCTGGCTTCTAGTTGTCCTACTCCCTATACAAGGCCTGATATCACCTCATCGGACGAAGGAGATATTATTTTAGAAGGTTGCAGACACCCTTGTGTGGAGGCACAAGACTGGGTGAATTTTATACCAAATGATTGTAAGCTTATCAGAGGAAAAAGTTGGTTTCAAATAATAACAGGTCCAAACATGGGTGGGAAATCAACATTCATCCGGCAGGTGGGCGTGAATATTTTGATGGCGCAAGTTGGTTGCTTTGTTCCATGTGACAAAGCCAGCATATCTGTTCGTGATTGCATTTTTGCTCGTGTTGGTGCAGGTGACTGCCAACTTCGTGGAGTTTCTACCTTTATGCAAGAAATGCTTGAAACTGCATCAATATTAAAAGGAGCTACTGACAAGTCCTTGATAATCATTGACGAGTTGGGACGTGGGACATCTACTTACGATGGATTTGGTCTTGCTTGGGCCATTTGTGAGCACATAGTTGATGTGATAAAAGCCCCTACTTTATTTGCAACTCATTTTCATGAACTGACTGCATTAGCCCATGAAAATGGTAGCAATGATCAACATAAACAAATTGTTGGTGTGGCAAATTATCATGTTAGTGCACATATTGATGCATCTACTCGCAAGCTAACTATGCTATACAAGGTTGAACCAGGAGCTTGTGATCAGAGTTTTGGTATTCATGTCGCTGAGTTTGCAAACTTCCCTGAAAGCGTTGTTGCCCTAGCTAGAGAAAAGGCTGCAGAACTAGAAGATTTTTCTCCTTCTGCGATATCCTTAATTGATTCTTCTGTAGAGGAGGTGGGTTCTAAACGTAAGAGAGTATTTGAATCTGATGACATGTCTAAAGGGGCCGCAAAGGCTCGCCAAATCCTTGAAGCTTTTGTTGCTTTGCCACTAGAAACCATGGACAAAACGCAAGCAATGCAAGAAGTTAGGAAGTTGAAAGATAATTTAGAGAAGGATGCACAAAACTGTCTTTGGTTGCAAAAATTCTTGTAG 2544 0.4041 MDENFDAFDNKLPELKLDSKQAQGFLSFFKTLSDDPRAIRFFDRRDYYTAHGENATFIAKTYYHTTTALRQLGSGSNALSSVSVSRNMFETIARDLLLERTDHTLEVYEGSGSNWRLVKSGTPGNIGSFEDVLFCYSECADSPVVVALSLNFRESGCTVGLGFVGLTKRLLGMAEFLDDSHFTNLELVKGSIEAVQDLVSGFEFAPGALGALLSYAELLADESNYGNYTLRRYNLDSYMRTCTAGMGKRLLHMWLKQPLLDVKEINLRLDVVQAFVEDTVLRQDLRQHLKRMSDIERLVHNLQKRRAGLQHVVKLYQSSIRLPYIKGALDRYDGQFSSMMKSRYLKDLELWTGVDRLNKFIELVETAVDLDHLENGEYMISSSYDTALSELKEKQELLESQIHNLHKQTADDLDLHIDKTLKLDKGTQFGHVFRITKKEEPKIRKKLNTQFIVLETRKDGVKFTNTKLKKLGDKYQQILEDYKSCQKQLVIKVFESLAALISELDVLLSFADLASSCPTPYTRPDITSSDEGDIILEGCRHPCVEAQDWVNFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMAQVGCFVPCDKASISVRDCIFARVGAGDCQLRGVSTFMQEMLETASILKGATDKSLIIIDELGRGTSTYDGFGLAWAICEHIVDVIKAPTLFATHFHELTALAHENGSNDQHKQIVGVANYHVSAHIDASTRKLTMLYKVEPGACDQSFGIHVAEFANFPESVVALAREKAAELEDFSPSAISLIDSSVEEVGSKRKRVFESDDMSKGAAKARQILEAFVALPLETMDKTQAMQEVRKLKDNLEKDAQNCLWLQKFL* 848
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g1014 847 SMART DNAend 230 547 IPR007696 GO:0005524|GO:0006298|GO:0030983
Psa4g1014 847 Gene3D - 522 844 IPR027417 -
Psa4g1014 847 Gene3D MutS, connector domain 123 199 IPR036678 GO:0005524|GO:0006298|GO:0030983
Psa4g1014 847 Coils Coil 468 488 - -
Psa4g1014 847 Pfam MutS family domain IV 384 480 IPR007861 GO:0005524|GO:0006298|GO:0030983
Psa4g1014 847 ProSitePatterns DNA mismatch repair proteins mutS family signature. 645 661 IPR000432 GO:0005524|GO:0006298|GO:0030983
Psa4g1014 847 Coils Coil 819 839 - -
Psa4g1014 847 Pfam MutS domain III 235 511 IPR007696 GO:0005524|GO:0006298|GO:0030983
Psa4g1014 847 Gene3D - 213 350 - -
Psa4g1014 847 Gene3D DNA repair protein MutS, domain I 9 122 IPR016151 GO:0005524|GO:0006298|GO:0030983
Psa4g1014 847 Coils Coil 285 305 - -
Psa4g1014 847 CDD ABC_MSH2_euk 535 765 - -
Psa4g1014 847 PANTHER DNA MISMATCH REPAIR PROTEIN MSH2 24 832 IPR032642 GO:0003677|GO:0005524|GO:0006298|GO:0032300
Psa4g1014 847 Coils Coil 388 408 - -
Psa4g1014 847 PIRSF MSH2 240 847 IPR011184 GO:0005524|GO:0006298|GO:0030983
Psa4g1014 847 PIRSF MSH2 186 241 IPR011184 GO:0005524|GO:0006298|GO:0030983
Psa4g1014 847 PIRSF MSH2 8 189 IPR011184 GO:0005524|GO:0006298|GO:0030983
Psa4g1014 847 Pfam MutS domain V 567 765 IPR000432 GO:0005524|GO:0006298|GO:0030983
Psa4g1014 847 Gene3D - 381 465 - -
Psa4g1014 847 PANTHER DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER 24 832 IPR045076 GO:0005524|GO:0006298|GO:0030983|GO:0140664
Psa4g1014 847 Pfam MutS domain I 24 129 IPR007695 GO:0005524|GO:0006298|GO:0030983
Psa4g1014 847 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 521 766 IPR027417 -
Psa4g1014 847 SMART mutATP5 564 762 IPR000432 GO:0005524|GO:0006298|GO:0030983
Psa4g1014 847 SUPERFAMILY DNA repair protein MutS, domain III 235 516 IPR036187 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g1014 Psa-Chr4 75596438 75605950 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g1014 K08735 - jre:109012023 1310.82
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa4g1014 4 75596438 75605950 Psa4g1014 4 75596438 75605950 ECH