Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g1007 ATGGTTACCGGAGTATTAGAAATGGATGCTGATAACAGTCTTCACAAGCAAGCTGCTGAAGTGTCTAATGGAAGAGGCGAGAGCTCGCTTTCGCGTTCCGATGCCAGCGAGGCACAGCCTAATGCTAAAAGGGTTAGGGTGCAGATGCAGAAGGAACTAACTTTTAAGGACATGTATGAAAACAAAGAGCTGTTTGAGGAGGACGATGAGGAGGATACTGATTGGGAGCCGTGTCCGGTGGAGAAGTCTGTTGAAGTCATCAAGTGGTTCTGTAAAAACTGTACTATGGATAACCTAGACAATGATATCTGCTGCGAAGAATGTGGGGAGCATAAAGATTCTAAAATCCTAAGCCTTGGGCATTTTGCATCGCCCTTTGCACAAGATGGAGGTCTGAATGAGATCCAACCAAGTATAAAAGCAATGAGAGATTTTGACTCCCAGGAATCAGCTGCAAACAGTTCTACGGCAATTGGTTTTGATGAAAGAATGTTGTTACATGCAGAAGTTGAAAAGAAATCGCATCCACACCCTGAAAGGCCAGATCGACTTCGAGCAATTGTTGCTAGTCTTACGAGAGCTGGTATATTTCCAGGGAGATGCTATCCAATTCCTGCTAGAGAAATCACTCAAGAAGAACTTATGATGGTTCATTCTTCGGAGCATATTGAATCTGTGGAAGTTACGAGCAAGTTAATGTCTAGTTATTTCACTTCCGACACATACGCCAACAAGCATTCAGCATGTGCTGCTAGGCTTGCAGCTGGGTTATGTGCTGATCTGGCATCAGCAATTGTTTCTGGGCGTGTCAAAAATGGATTTGCTTTGGTTAGACCTCCTGGTCATCATGCCGGTGTAAAAGATGTGATGGGCTTTTGTCTTCACAATAATGCTGCAGTGGCAGCATTGGCAGCTCAGGCTGCAGGGGCTAGGAAAGTTCTAATTTTAGATTGGGATGTTCATCACGGAAATGGCACACAGGAAATATTTGAGAAAAACAAATCAGTCTTGTATATTTCATTGCATAGACACGAGGACGGAACATTTTATCCTGGTACTGGAGGTGCTCATGAGGTTGGTTACATGGGTGCAGAAGGATACTGTGTGAATATTCCATGGAGTCGAGGTGGTGTTAGTGATAATGATTACAATTTTGCATTTCAGCATGTTGTACTTCCTATAGCTTCTGAATTTGCTCCAGATTTTACCATAATATCAGCAGGATTTGATGCTGCAAGAGGTGATCCCCTAGGAGGTTGTGATATTACTCCCTCTGGCTACGCACAGATGACACACATGTTGAATGCCCTATCTGGTGGAAAAATGCTTGTTATTCTTGAGGGGGGCTATAATCTTCGATCTATATCATCTTCTGCAACTGCAGTAATCAAGGTATTACTGGGTGAGAGTCATGTACCCGAACTGGAAAACAGTTTTCCTACCAAATCTGGCCTGCAGACTGTTTTCGAAGTCCTCGACATTCAGAATAATTTTTGGCCTTCCTTGAAACCTATCTTTGAATATGTGATGTCACTTTGGGAAATGCGCTGTCTTGGAAAAAAAGGACATATGGCGCCATTGACTATCGAACAAAAAAAGGCCCTTCATGCCAAGCAAAAAGTTGCTCGAGGTGAGAGATGGTCTGGCGATCCTTACACCCATCTTGGCAGCCCATTCGAAAAAGGAAAAAGGAAAATGGGCGATAGAGGAACCATTATCTCCACTCGCCCTTTAAAGATCGTGATTCCTGCCATGGCTAGACAGGCAGACTCTACTTCTCAAAGCCACCCCTCTATTGAAGTGCAACCCACCCCCACCATCGATTTAGATGCACAACTGGAAATTGTCGATCTGGATGGAATGCCTAAGAAGAGGAAATCCTCCTTTGCTCCCTTTGGGAATAAGGTACAGTCCCTCTGGGACAATGATTTTGACGCCAGGAGTTTTCTGCAAGCGCGCTTGGATTTCTCTATTGACTTCCCTAATGATCATCACATGGCGGCTCATATGGGAGCCAGGCAAATGTCGAATGCACTGGAGACGCATATGTTAAGGGGGTTCCTGATAGAACGCGCGATGTTTGAGGCCCATTGTCAGTCTGACAAGCTGGTAGCTGATCTGAAAGTTCAATTGAACACTCGGCGAGAGGTGGCGACTGAGGCTCATAATTCCCTGAAGTCCCTCATTGAAGAGCGTGACCGACTGAAGGAATCTAAGAAAAATAAAAATAAAAAGGCTAAAAAGCTTAAGGAAGAGCTCGTCTGTGTGAGAACGGAGCTGACAACGATGAAGGAGTCTGCGAAGGCAGAGGCTTTCCTCAAGAACATGCTGGAAGAAGACTTGGCTGACGCCCAGAATGACATCGTTGCCTCAGAGGACAGAGCATTTGAAAAAGCGAAAGCCCAGGTGGCTTGCCTCTATCCTGACCTAGATCTTAGCAAACTTGACCTTTTCAAGGTTGTTAAGGATGGCCATCTAGTGGATGAGGAAGATCCAGTGTATTAG 2505 0.4483 MVTGVLEMDADNSLHKQAAEVSNGRGESSLSRSDASEAQPNAKRVRVQMQKELTFKDMYENKELFEEDDEEDTDWEPCPVEKSVEVIKWFCKNCTMDNLDNDICCEECGEHKDSKILSLGHFASPFAQDGGLNEIQPSIKAMRDFDSQESAANSSTAIGFDERMLLHAEVEKKSHPHPERPDRLRAIVASLTRAGIFPGRCYPIPAREITQEELMMVHSSEHIESVEVTSKLMSSYFTSDTYANKHSACAARLAAGLCADLASAIVSGRVKNGFALVRPPGHHAGVKDVMGFCLHNNAAVAALAAQAAGARKVLILDWDVHHGNGTQEIFEKNKSVLYISLHRHEDGTFYPGTGGAHEVGYMGAEGYCVNIPWSRGGVSDNDYNFAFQHVVLPIASEFAPDFTIISAGFDAARGDPLGGCDITPSGYAQMTHMLNALSGGKMLVILEGGYNLRSISSSATAVIKVLLGESHVPELENSFPTKSGLQTVFEVLDIQNNFWPSLKPIFEYVMSLWEMRCLGKKGHMAPLTIEQKKALHAKQKVARGERWSGDPYTHLGSPFEKGKRKMGDRGTIISTRPLKIVIPAMARQADSTSQSHPSIEVQPTPTIDLDAQLEIVDLDGMPKKRKSSFAPFGNKVQSLWDNDFDARSFLQARLDFSIDFPNDHHMAAHMGARQMSNALETHMLRGFLIERAMFEAHCQSDKLVADLKVQLNTRREVATEAHNSLKSLIEERDRLKESKKNKNKKAKKLKEELVCVRTELTTMKESAKAEAFLKNMLEEDLADAQNDIVASEDRAFEKAKAQVACLYPDLDLSKLDLFKVVKDGHLVDEEDPVY* 835
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g1007 834 Coils Coil 718 766 - -
Psa4g1007 834 MobiDBLite consensus disorder prediction 1 47 - -
Psa4g1007 834 Gene3D Histone deacetylase domain 153 505 IPR037138 -
Psa4g1007 834 ProSitePatterns Zinc finger RanBP2-type signature. 89 108 IPR001876 -
Psa4g1007 834 PRINTS Histone deacetylase superfamily signature 279 302 IPR000286 -
Psa4g1007 834 PRINTS Histone deacetylase superfamily signature 312 327 IPR000286 -
Psa4g1007 834 PRINTS Histone deacetylase superfamily signature 400 410 IPR000286 -
Psa4g1007 834 PANTHER HISTONE DEACETYLASE 25 533 - -
Psa4g1007 834 PANTHER HISTONE DEACETYLASE-RELATED 25 533 - -
Psa4g1007 834 MobiDBLite consensus disorder prediction 16 38 - -
Psa4g1007 834 Coils Coil 774 794 - -
Psa4g1007 834 Pfam Histone deacetylase domain 177 465 IPR023801 -
Psa4g1007 834 SUPERFAMILY Arginase/deacetylase 153 499 IPR023696 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g1007 Psa-Chr4 75393845 75404007 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g1007 - - mtr:MTR_4g111985 854.358
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa4g1007 4 75393845 75404007 Psa4g1007 4 75393845 75404007 ECH