Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g0977 ATGACAGGTGCAAGACCAGTTACAACACCCTTGATGCCACATTCATCTAGGAACCTACCTGATTTCAAGAAATCTGTTAAATTGAAGTATGTTAAACTTGGTTATCACTATCTAATCACTCATGGAATGTACCTTTTTCTTTCACCACTTGTGGTGTTAATTGCTGCTGAGTTATCCACTTTTTCAATCCAAGATCTTTATGATATTTGGGAGAATCTACAATACAATTTGTTATCTGTAATATTTTGCTCAACTCTACTTGTTTTTCTATCCACACTCTACTTTCTGACTCGTCCGAAACCAGTGTACCTTGTCGATTTCTCGTGTTATAAGCCAGAAGAATTGCGGAAGTGCACAAAAAGGAAGTTTATGGATCAGTCTCGGTTGATTAGTACTTTTACGGAGGAGAATCTCGAATTTCAGAGAAAGATTCTCGAGAGATCGGGACTCGGGGAATCCACTTACCTTCCTGAGGCTGTCCTCAACTTTCCTCCTAACCCTTCGATGAAGGAAGCTAGGAAAGAAGCCGAGACTGTGATGTTTGGTGCTATTGATGAGCTATTCGGTAAGACCTCGGTGAAGCCTAAGGATATAGGAATTGTGATTGTGAATTGTAGCCTGTTTAACCCAACTCCATCGCTATCTGCAATGGTTGTCAATCATTACAAGCTTCGAGGGAATGTGAAGAGTTACAACCTTGGTGGGATGGGATGCAGTGCGGGGCTGATCTCAATCGATCTTGCTAAAGATCTTCTACAGGGCAATCCTAATTCATATGCATTGGTTGTTAGCATGGAGAATATCACGTTGAATTGGTACTTTGGAAACGAACGGTCGAAGCTTGTTTCTAATTGTTTGTTTCGTATGGGAGGAGCTGCGGTTCTGCTTTCCAATAAAAGCTCGGACAAAAGAAGATCGAAATACCGATTGATCACTACTGTTCGCACTAACAAGGCTTCTGATGACAAGTGCTTTAGCTGTGTAACCCAAGAAGAAGATGCAGATGGCAAGATTGGTGTTAATTTGTCTAAAGATCTTATGGCAGTTGCTGGGGATGCTTTAAAAACCAATATCACTACACTAGGGCCGCTTGTACTTCCAACGTCCGAGCAGCTTCTATTCTTCGCTACGTTGGTTGTGAAGAAACTTTTCAAGATGAAGATTAAGCCTTATATTCCAGATTTCAAGCTAGCTTTTGAACATTTTTGCATCCATGCCGGAGGCAGAGCTGTTTTGGATGAAGTGGAGAAAAACTTGCAGCTACCTCCTTGGCATATGGAGCCATCGAGGATGACACTTTATCGTTTCGGAAACACATCTAGCAGTTCGCTTTGGTATGAACTTGCTTACACAGAAGCCAAAGGGAGGATCAAGAAAGGAGATAGAACATGGCAAATAGCATTTGGCTCTGGATTCAAGTGTAACAGTGCAGTGTGGAAGGCTCTCAGGACCATCAACCCTGCTAAGGAGAAAAGCCCTTGGATTGATGAAATTGATCAGTTTCCCGTCGATGTACCTAAGGTAGCTACCATTTAA 1536 0.4199 MTGARPVTTPLMPHSSRNLPDFKKSVKLKYVKLGYHYLITHGMYLFLSPLVVLIAAELSTFSIQDLYDIWENLQYNLLSVIFCSTLLVFLSTLYFLTRPKPVYLVDFSCYKPEELRKCTKRKFMDQSRLISTFTEENLEFQRKILERSGLGESTYLPEAVLNFPPNPSMKEARKEAETVMFGAIDELFGKTSVKPKDIGIVIVNCSLFNPTPSLSAMVVNHYKLRGNVKSYNLGGMGCSAGLISIDLAKDLLQGNPNSYALVVSMENITLNWYFGNERSKLVSNCLFRMGGAAVLLSNKSSDKRRSKYRLITTVRTNKASDDKCFSCVTQEEDADGKIGVNLSKDLMAVAGDALKTNITTLGPLVLPTSEQLLFFATLVVKKLFKMKIKPYIPDFKLAFEHFCIHAGGRAVLDEVEKNLQLPPWHMEPSRMTLYRFGNTSSSSLWYELAYTEAKGRIKKGDRTWQIAFGSGFKCNSAVWKALRTINPAKEKSPWIDEIDQFPVDVPKVATI* 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g0977 511 SUPERFAMILY Thiolase-like 88 306 IPR016039 GO:0016746
Psa4g0977 511 Gene3D - 105 481 IPR016039 GO:0016746
Psa4g0977 511 SUPERFAMILY Thiolase-like 287 483 IPR016039 GO:0016746
Psa4g0977 511 PIRSF Very_long_ch_3-ktacl-CoA_syn 21 511 IPR012392 GO:0006633|GO:0016020|GO:0016747
Psa4g0977 511 PANTHER 3-KETOACYL-COA SYNTHASE 8 510 - -
Psa4g0977 511 Pfam 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal 400 480 IPR013747 -
Psa4g0977 511 CDD CHS_like 87 479 - -
Psa4g0977 511 Pfam FAE1/Type III polyketide synthase-like protein 94 383 IPR013601 GO:0006633|GO:0016020|GO:0016747
Psa4g0977 511 PANTHER 3-KETOACYL-COA SYNTHASE 8 510 IPR012392 GO:0006633|GO:0016020|GO:0016747
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g0977 Psa-Chr4 73176434 73180345 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g0977 10 511 Miscellaneous Gene Families AT2G26640 82.470 0.0 889
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g0977 K15397 - gmx:100817884 937.947
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa4g0977 4 73176434 73180345 Psa4g0977 4 73176434 73180345 ECH
Psa4g0977 4 73176434 73180345 Psa1g0607 1 37695763 37698304 PCT