Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g0563 ATGGCGGACAAGTACAACATGAAGAATCCCGCCGTCAAGCGGATTCTCCAAGAGGTCAAAGAAATGCAATCAAACCCTTCCGATGATTTCATGAGCTTACCTCTCGAGGAAAATATATTCGAATGGCAGTTTGCAATTAGGGGACCTGGTGAAACTGAATTTGAGGGTGGTATTTATCATGGAAGGATTCAATTGCCTGCTGAATATCCATTCAAACCTCCTTCGTTTATGTTGTTGACACCTAATGGTCGTTTTGAGACACAAACCAAGATTTGCTTGAGCATATCAAATCATCACCCTGAGCATTGGCAACCATCATGGAGTGTTAGGACCGCTCTAGTTGCACTGATTGCATTTATGCCCACCAGCCCAAATGGTGCGTTGGGCTCATTAGACTACAAAAAAGAAGATAGACGCGCCTTGGCAATTAAGTCTCGTGAAGCATCTCCAAAATTTGGGACTCCTGAACGTCAAAAACTGATTGATGAGATTCATGACTATATGCTAAGCAAAGCAAACCCAGTTCCTCAACCTAGCCCTTCACAGGCTTCTGAAGAACCCAAAAACGAAGAGGCCGAGACTCAAGTTACTTTGCCAAACCCTGAGGCTCTACCTGCAGGAGAGGGGATTCCAGATGAAGCAGGTGACAGAATAGTTGAAGAACAAGAAGTCCCTGTTAATGCTAATCCTAACCCTGTAGGAGTTGAAGCGACAAATGAGATTCAACCTGGAGTCCCAAGCAATCAGTTGCCCCCAAAGTCAGAGACAAGAGTTCAAAATCTGAAACCAGAGACAAGGGTTCAAAAACCTGATGACCGATTGTTCACAGTGGCAGCTATTGGACTTGCTATAGCAATTATGGTTCTTCTGCTGAAGAAATTCATTAAATCTACAGAACATGGAGCAGTTTTCATGAATGAATCTTAG 927 0.4358 MADKYNMKNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGETEFEGGIYHGRIQLPAEYPFKPPSFMLLTPNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPTSPNGALGSLDYKKEDRRALAIKSREASPKFGTPERQKLIDEIHDYMLSKANPVPQPSPSQASEEPKNEEAETQVTLPNPEALPAGEGIPDEAGDRIVEEQEVPVNANPNPVGVEATNEIQPGVPSNQLPPKSETRVQNLKPETRVQKPDDRLFTVAAIGLAIAIMVLLLKKFIKSTEHGAVFMNES* 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g0563 308 Gene3D Ubiquitin Conjugating Enzyme 2 188 IPR016135 -
Psa4g0563 308 MobiDBLite consensus disorder prediction 174 207 - -
Psa4g0563 308 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 6 308 - -
Psa4g0563 308 MobiDBLite consensus disorder prediction 242 265 - -
Psa4g0563 308 CDD UBCc 12 151 IPR000608 -
Psa4g0563 308 Pfam Ubiquitin-conjugating enzyme 14 125 IPR000608 -
Psa4g0563 308 MobiDBLite consensus disorder prediction 242 258 - -
Psa4g0563 308 SMART ubc_7 13 173 - -
Psa4g0563 308 PANTHER BNAC01G21910D PROTEIN 6 308 - -
Psa4g0563 308 SUPERFAMILY UBC-like 11 132 IPR016135 -
Psa4g0563 308 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 10 165 IPR000608 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g0563 Psa-Chr4 34577133 34579838 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g0563 1 307 Miscellaneous Gene Families AT3G17000 64.241 5.55e-138 391
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g0563 K10578 - gmx:100804054 498.049
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa4g0563 4 34577133 34579838 Psa4g0563 4 34577133 34579838 ECH