Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g4016 ATGGCAGTGACCCCCAAAATTGCGCCTTCAATGCTATCATCGGACTTCGCTAATTTGGCTTCCGAAGCTCATCGTATGATCAATTACGGCGCTGATTGGCTTCATATGGACATCATGGATGGGCACTTTGTCCCCAATTTAACTATGGGCGCTCCAATCATTGAAAGTTTGAGAAAGCACACAAAGGCATATTTGGATTGTCATCTGATGGTTACAAACCCTCTTGATTATGTTGAATCTTTGGGAAAAGCTGGGGCTTCTGGGTTTACATTTCATGTAGAGGCATCAAAAGACAACTGGAAAGAACTTATCCAAAATATTAAGTCACAAGGCATGAAGCCTGGTGTAGCCATAAATCCTGGGACATCGGTTGAAGAGGTTTATCCTCTGGTTGAATCCGAAAATCCTGTGGAAATGGTTCTTGTCATGACTGTAGAACCTGGATTTGGAGGACAAAAATTCATGCCAGATATGATGGAAAAGGTTCGAATACTGAGGAAGAAGTATCCATCACTTGACATAGAGGTTGATGGTGGTTTAGGACCTTCAACCATAGACGCAGCTGCATCAGCAGGAGCGAATTGCATTGTTGCTGGAAGTTCAGTGTTCGGAGCCCCTGAGCCAGCTCAAGTTATATCCTTACTGAGGAATTCTGTAGAGAAAGCACAGTAA 672 0.4345 MAVTPKIAPSMLSSDFANLASEAHRMINYGADWLHMDIMDGHFVPNLTMGAPIIESLRKHTKAYLDCHLMVTNPLDYVESLGKAGASGFTFHVEASKDNWKELIQNIKSQGMKPGVAINPGTSVEEVYPLVESENPVEMVLVMTVEPGFGGQKFMPDMMEKVRILRKKYPSLDIEVDGGLGPSTIDAAASAGANCIVAGSSVFGAPEPAQVISLLRNSVEKAQ* 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g4016 223 TIGRFAM rpe: ribulose-phosphate 3-epimerase 6 216 IPR026019 GO:0004750|GO:0006098
Psa3g4016 223 PANTHER RIBULOSE-PHOSPHATE 3-EPIMERASE 1 223 - -
Psa3g4016 223 SUPERFAMILY Ribulose-phoshate binding barrel 5 221 IPR011060 -
Psa3g4016 223 Gene3D Aldolase class I 1 223 IPR013785 -
Psa3g4016 223 PIRSF RPE 1 223 IPR026019 GO:0004750|GO:0006098
Psa3g4016 223 CDD RPE 6 216 IPR000056 GO:0005975|GO:0016857
Psa3g4016 223 Hamap Ribulose-phosphate 3-epimerase [rpe]. 4 218 IPR026019 GO:0004750|GO:0006098
Psa3g4016 223 Pfam Ribulose-phosphate 3 epimerase family 6 203 IPR000056 GO:0005975|GO:0016857
Psa3g4016 223 PANTHER RIBULOSE-5-PHOSPHATE-3-EPIMERASE 1 223 IPR000056 GO:0005975|GO:0016857
Psa3g4016 223 ProSitePatterns Ribulose-phosphate 3-epimerase family signature 1. 34 48 IPR000056 GO:0005975|GO:0016857
Psa3g4016 223 ProSitePatterns Ribulose-phosphate 3-epimerase family signature 2. 140 162 IPR000056 GO:0005975|GO:0016857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g4016 Psa-Chr3 372760948 372764556 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g4016 K01783 - gmx:100500085 406.757