Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g3761 ATGATTTCGCTGCAAGCCGTTTATTCTCCTCATTCGCACTTTCCCCTTTTGGAAACCTCACTCACGCTTCCAGAATCTTCTCTTCTATACACAAACCCAATTCCTTCATGTGGAACACTCTCATCCGCGCCCAACAACATCCCCACAATTCTATCTCCCTTTACATCTCTATGCGTACACTTGGTGTCTTGCCAGGTCCACACACACGTGCTTAAATTCGGGCTCGACTTAGATTCTCACGTCGCTAACGGTTTGGTGCGAGGTTATTCTGTTTCTGGTGATTTGGTTGATGCCCGTCATGTGTTTGATGAAATTCTGATGAAAAATTTGAGTCTTTGGACCACCATGATTTGTGGGTATGCTCAGAATTTTTGTCACAACGAGGCTTTGGATCTTTTCGAGGGGATGATTGCTCTTGGGTTTGAGCCTAATGGTGCTACCTTGGCTTCAGTATTGTCGGCTTGTGCGCGGTCTGGATGTCTCGAGCTTGGGGAAAGGATTCATGAGTTTATGAGAGTGAAAGGGGTTGAAGTGGGCGTTATTCTTGGGACGGCATTGGTTTATATGTACGCCAAGAATGGGTCAATTTTGACCGCAAGGAAGTTGTTTGATGAAATGCTTGAGAGGAATGTTGTTACTTGGAATGCTATGATATGCGGTTTAGCTTCTCATGGACACGTTGAAGATGCTATTAGTTTATTTGAGAGTATGAAAAAGGATGGGGTTGTTGTTCCTAATGATGTTACATTCATTGGGGTTTTATCTGCGTGTTGTCATGCAGGTTTGATTGGTGTCGGTCGCGAAGTGTTTTGCTCAATGAAGGATGTGCATGGAATTGAACCGAAGATTGAGCACTATGGGTGCATGGTTGATCTTCTTGGGAGAGGAGGTAAGTTGTTGGAGGCAGAGGAAATGATAAAAAGGATGCCGTGGAAACCTGATGTGGTTATTTTGGGATCTTTGCTGGCAGCTAGCAAGAATAATGGAAACACTGAGGTTGCTGAAAGAGTAGTGAAAGAAATTCTTACTCTAGAACCTCATAATCATGGAGCTCGTGTTGCTTTGTCGAACATGTACGCAGAGGCTGGACAATGGCAAGAAGTTTTGAGACTGAGGAAGACGATGAAAGAAGAGAAACTCAAGAAAGCTCCAGGATGGAGTCTTGTTGCCACTTAA 1176 0.4413 MISLQAVYSPHSHFPLLETSLTLPESSLLYTNPIPSCGTLSSAPNNIPTILSPFTSLCVHLVSCQVHTHVLKFGLDLDSHVANGLVRGYSVSGDLVDARHVFDEILMKNLSLWTTMICGYAQNFCHNEALDLFEGMIALGFEPNGATLASVLSACARSGCLELGERIHEFMRVKGVEVGVILGTALVYMYAKNGSILTARKLFDEMLERNVVTWNAMICGLASHGHVEDAISLFESMKKDGVVVPNDVTFIGVLSACCHAGLIGVGREVFCSMKDVHGIEPKIEHYGCMVDLLGRGGKLLEAEEMIKRMPWKPDVVILGSLLAASKNNGNTEVAERVVKEILTLEPHNHGARVALSNMYAEAGQWQEVLRLRKTMKEEKLKKAPGWSLVAT* 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g3761 391 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 109 143 IPR002885 -
Psa3g3761 391 SUPERFAMILY TPR-like 189 368 IPR011990 GO:0005515
Psa3g3761 391 Gene3D Tetratricopeptide repeat domain 189 354 IPR011990 GO:0005515
Psa3g3761 391 Gene3D Tetratricopeptide repeat domain 51 178 IPR011990 GO:0005515
Psa3g3761 391 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 210 244 IPR002885 -
Psa3g3761 391 Pfam PPR repeat 83 109 IPR002885 -
Psa3g3761 391 Pfam PPR repeat 150 176 IPR002885 -
Psa3g3761 391 Pfam PPR repeat 285 310 IPR002885 -
Psa3g3761 391 Pfam PPR repeat 112 141 IPR002885 -
Psa3g3761 391 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 144 178 IPR002885 -
Psa3g3761 391 PANTHER OS11G0483950 PROTEIN 50 390 - -
Psa3g3761 391 Pfam PPR repeat family 209 259 IPR002885 -
Psa3g3761 391 TIGRFAM PPR: pentatricopeptide repeat domain 112 144 IPR002885 -
Psa3g3761 391 TIGRFAM PPR: pentatricopeptide repeat domain 212 246 IPR002885 -
Psa3g3761 391 TIGRFAM PPR: pentatricopeptide repeat domain 184 212 IPR002885 -
Psa3g3761 391 TIGRFAM PPR: pentatricopeptide repeat domain 248 281 IPR002885 -
Psa3g3761 391 Pfam E motif 330 389 IPR046848 -
Psa3g3761 391 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 50 390 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g3761 Psa-Chr3 330012610 330017245 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g3761 65 389 Glycoside Hydrolase AT3G49170 38.154 3.26e-67 226
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g3761 - - mtr:MTR_7g033400 589.341