Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g3437 ATGGACGAAGACTTTGATATTCCCCAAGCTGAAGAAATGAACGAGGATTTCGATCTCGCCGAAGACAAAGTAGGCGAAGAGAGACAAATCGGTGATCGCGGCCTCAAGAAGAAGCTTCTCAAGGAAGGTGAAGGATGGGACACTCCCGAAGTCGGAGACGAAGTTCAAGTTCACTACACGGGGACTTTGATTGATGGAACTAAGTTTGATTCAAGTCTTGATAGAGATTCTCCTTTCAGCTTCACGCTTGGACTAGGGAAAGTAATTCAAGGATGGGATGAAGGTATTAAAACCATGAAGAAAGGTGAAAAGGCACTCTTCACCATCCCACCCGAGCTAGCTTATGGTGAATCTGGTTCACCTCCAACAATTCCTCCTAATGCGACGCTCCAATTTGAAGTTGAGCTGTTGTCTTGGACGAGCGTGAAGGACATATGTAAAGATGGCGGTTTATTTAAGAGGATACTTAGTGAGGGGGAGAAATGGGAGAACCCCAAGGATCCTGATGAAGTATTGGTTAAGTATGAGGTTCGTCTAGAAGATGGAAAAGTTGTTGTAGCAAAGTCTGATGGAGTGGAGTTCACTGTCAGTGAGGGTCATTATTGCCCTGCATTTTCAAAGGCTGTTAAAACCATGAAGAAGGGAGAGAAAGTGATTTTATTAGTAAAGCCTCAATATGGATTTGGCGAGAAGGGGAAACCAGCACACGGTGATGAAGGTGCAGTTCCACCAAATGCATCACTACAGATCACACTTGAGTTGGTTTCTTGGAAGACTGTTTCAGATGTGACTAGCGACAAGAAGGTTATAAAGAAGATCCTGAAGGAAGGGGAAGGATATGATCGTCCAAATGAAGGGGCCATTGTAAAATTGAAACTAGTTGGTAAACTGCAAGATGGTACTGTCTTTTTCGAAAAGGGCCATGGTGAAGAAGAGAAGCTGTTCGAATTCAAAACAGACGAGGAGCAAGTCATTGATGGACTTGATAAAGCTGTATTGACTATGAAGAAGGGTGAGGTAGCATTATTGACTATTGCTCCCGAGTATGCATTTGGCGCATCACAGTCCCAACAGGAGTTGGTTGTAATTCCCGCTAATTCGACTGTGTATTATGAAGTTGAACTAGTGTCATTTGACAAGGAGAAGGAGTCTTGGGATATGAGCACTGAAGAAAAAATTGAAGCTGCTGGTAAGAAGAAAGAAGAAGGGAATGTTTTGTTTAAAGCCAGTAAATATGCAAGGGCTTCCAAAAGATACGAGAAGGCTGTGAAGAACATAGAATACGATTCCTCCTTCAGCGAGGAGGAGAAAAAGCTGTCAAAAACCTTGAAGATTGCTTCCTATCTAAACAATGCTGCTTGCAAGTTGAAGTTGAAAGAGTACAAAGATGCAGAGAGATTGTGTACCAAGGTGTTGGATATCGAGAGCACAAACGTGAAAGGCCTCTATAGAAGGGCCCAGGCAAGTATGCAGTTGGGTGACTTGGATTTGGCTGAAATTGATGTTAAAAAAGCTCTTGAGGTTGAACCTGACAACAGGGAAGTAAAGCTGGAGTACAGGAATTTGAAGGAAATGATAAAGGAGTACAATAAAAAGCAGGCGAAATTTTACGGAAATATGTTCAGCTTGACAAAGGCTTGA 1641 0.4272 MDEDFDIPQAEEMNEDFDLAEDKVGEERQIGDRGLKKKLLKEGEGWDTPEVGDEVQVHYTGTLIDGTKFDSSLDRDSPFSFTLGLGKVIQGWDEGIKTMKKGEKALFTIPPELAYGESGSPPTIPPNATLQFEVELLSWTSVKDICKDGGLFKRILSEGEKWENPKDPDEVLVKYEVRLEDGKVVVAKSDGVEFTVSEGHYCPAFSKAVKTMKKGEKVILLVKPQYGFGEKGKPAHGDEGAVPPNASLQITLELVSWKTVSDVTSDKKVIKKILKEGEGYDRPNEGAIVKLKLVGKLQDGTVFFEKGHGEEEKLFEFKTDEEQVIDGLDKAVLTMKKGEVALLTIAPEYAFGASQSQQELVVIPANSTVYYEVELVSFDKEKESWDMSTEEKIEAAGKKKEEGNVLFKASKYARASKRYEKAVKNIEYDSSFSEEEKKLSKTLKIASYLNNAACKLKLKEYKDAERLCTKVLDIESTNVKGLYRRAQASMQLGDLDLAEIDVKKALEVEPDNREVKLEYRNLKEMIKEYNKKQAKFYGNMFSLTKA* 547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g3437 546 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 163 254 IPR001179 GO:0003755
Psa3g3437 546 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 282 376 IPR001179 GO:0003755
Psa3g3437 546 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 48 137 IPR001179 GO:0003755
Psa3g3437 546 Coils Coil 512 532 - -
Psa3g3437 546 PANTHER PEPTIDYLPROLYL ISOMERASE 267 378 - -
Psa3g3437 546 PANTHER PEPTIDYLPROLYL ISOMERASE 379 543 - -
Psa3g3437 546 PANTHER PEPTIDYLPROLYL ISOMERASE 1 265 - -
Psa3g3437 546 Gene3D - 259 380 IPR046357 GO:0003755
Psa3g3437 546 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 168 258 IPR001179 GO:0003755
Psa3g3437 546 SUPERFAMILY TPR-like 384 541 IPR011990 GO:0005515
Psa3g3437 546 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 1 265 - -
Psa3g3437 546 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 267 378 - -
Psa3g3437 546 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 379 543 - -
Psa3g3437 546 SUPERFAMILY FKBP-like 144 259 - -
Psa3g3437 546 SUPERFAMILY FKBP-like 15 144 - -
Psa3g3437 546 SMART tpr_5 479 512 IPR019734 GO:0005515
Psa3g3437 546 SMART tpr_5 445 478 IPR019734 GO:0005515
Psa3g3437 546 SMART tpr_5 396 429 IPR019734 GO:0005515
Psa3g3437 546 Gene3D Tetratricopeptide repeat domain 382 539 IPR011990 GO:0005515
Psa3g3437 546 ProSiteProfiles TPR repeat profile. 479 512 IPR019734 GO:0005515
Psa3g3437 546 SUPERFAMILY FKBP-like 261 396 - -
Psa3g3437 546 Gene3D - 6 141 IPR046357 GO:0003755
Psa3g3437 546 Gene3D - 142 258 IPR046357 GO:0003755
Psa3g3437 546 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 52 140 IPR001179 GO:0003755
Psa3g3437 546 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 286 379 IPR001179 GO:0003755
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g3437 Psa-Chr3 290194918 290200074 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g3437 23 542 Calmodulin-binding Proteins AT3G25230 77.115 0.0 820
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g3437 K09571 - gmx:100812632 896.345
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa3g3437 3 290194918 290200074 Psa4g4716 4 416511480 416514349 PCT