Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g3138 ATGGCTGAAACAAAGTTGAGCAGCGTGAAGGATAAAAGATGGTCACTAGAGGGTATGACTGCATTAGTGACAGGAGGAACTCGAGGCATTGGGTACGCAATTGTGGAAGAGTTAGCAGAATTTGGAGCAGCAGTGCATATTTGTTCACGAAATGAAAATGATATTAACAAATGTTTGGAAGTGTGGAAAAGCAAAGGGTTTAATGTAACAGGATCAATATGTGATATACTCATTCATGAACAACGCAAGACATTAATGGAGAATGTTTCCTCTATTTTTCATGGAAAGCTCAATATTCTAGTCAATAATGCTGCAAAACCTTCAATGAAGAAAATAATAGATAATAATGATGAAGATATAACAAGTATAGTTGGTACCAATTTTATGGCCGGTTACCATTTATGTCAACTTGCACACCCACTTCTAAAAGAGTCTGGATATGGAAGCATAGTGTTTACTTCCTCCGTTGCTGGTTTAAAAGCTATTCCTATTTTATCTGTTTATGCAGCAACTAAAGGTGCGGTGAATCAATTCACCAAAAACTTGGCATTAGAATGGGCAAAGGATAATATTCGTGCAAATGCTGTTGCACCTGGACCTGTCAATACTGAACTTTTGGGATCAATAATGGATGCTTCTGAAGGGGGTGGAGTTGTAGAGGGTATCGTGTCTCAAACTCCTATGGGTCGTATGGGAGAGACTAGAGAAATATCATCATTAGTTGCTTTTCTTTGTCTTCCAGCTGCATCATACATTACTGGACAAGTTATAGCTATTGATGGAGGTTACACTGCTTAG 798 0.3835 MAETKLSSVKDKRWSLEGMTALVTGGTRGIGYAIVEELAEFGAAVHICSRNENDINKCLEVWKSKGFNVTGSICDILIHEQRKTLMENVSSIFHGKLNILVNNAAKPSMKKIIDNNDEDITSIVGTNFMAGYHLCQLAHPLLKESGYGSIVFTSSVAGLKAIPILSVYAATKGAVNQFTKNLALEWAKDNIRANAVAPGPVNTELLGSIMDASEGGGVVEGIVSQTPMGRMGETREISSLVAFLCLPAASYITGQVIAIDGGYTA* 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g3138 265 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 17 265 IPR036291 -
Psa3g3138 265 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 95 106 IPR002347 -
Psa3g3138 265 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 148 156 IPR002347 -
Psa3g3138 265 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 168 187 IPR002347 -
Psa3g3138 265 Pfam Enoyl-(Acyl carrier protein) reductase 27 264 - -
Psa3g3138 265 PANTHER TROPINONE REDUCTASE 1 264 IPR045000 GO:0016491
Psa3g3138 265 PRINTS Glucose/ribitol dehydrogenase family signature 20 37 IPR002347 -
Psa3g3138 265 PRINTS Glucose/ribitol dehydrogenase family signature 95 106 IPR002347 -
Psa3g3138 265 PRINTS Glucose/ribitol dehydrogenase family signature 142 158 IPR002347 -
Psa3g3138 265 PRINTS Glucose/ribitol dehydrogenase family signature 168 187 IPR002347 -
Psa3g3138 265 PRINTS Glucose/ribitol dehydrogenase family signature 189 206 IPR002347 -
Psa3g3138 265 PRINTS Glucose/ribitol dehydrogenase family signature 227 247 IPR002347 -
Psa3g3138 265 PANTHER ENOYL-(ACYL CARRIER) REDUCTASE 1 264 - -
Psa3g3138 265 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 155 183 IPR020904 GO:0016491
Psa3g3138 265 Gene3D - 2 265 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g3138 Psa-Chr3 264615818 264623893 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g3138 11 264 Miscellaneous Gene Families AT2G29290 55.118 8.64e-100 290
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g3138 K08081 - gmx:100786456 394.815
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa3g3138 3 264615818 264623893 Psa5g2901 5 221340444 221344545 ECH
Psa3g3138 3 264615818 264623893 Psa3g3138 3 264615818 264623893 ECH