Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g2137 ATGGCTGCATTCCTCTCAACCCCACAACACATTCCCACACCCTTCATCACCAAATTCACCTCTTCCCCAAAACCATGGAACTTCCTCATTCTCAACCACCCTTTTCACCACAACACCTTCAAAGCCCTAGCTCCCTCACAACCCTTTTCCCCTCTCAATGCACTCCACACACAAGGACTCTATTCCCCTCCTCCCCCTTCAAAAACCGACAAAACTGACCCTGAAAACGACCCTATTTCAGTCCTCAACGACAGGATTCGTCGCGAGTATAGTAAAAGGGATGTTTCGAGGACTATTATGGACGCTAAAGAAGCTGATAAATACATAAAAATGGTTAAGGAACAGCAGCAGAGGGGGCTTCAGAAGCTTAAAGGTGATAGAGAGGCTAAAGATGGTACCATTAGTTATAAGGTGGACCCTTATACACTTCGTTCTGGGGACTATGTTGTGCATAAGAAAGTTGGTATTGGTAGGTTTGTTGGGATTAAATTAGATGTTTCGAAGAATTCCGTTGAACATACTGAGTATGTTTTCATTGAGTATGCTGATGGAATGGCAAAGCTTCCTGTTAAACAGGCTTCTAAAATGCTTTATAGATATAGTCTTCCAAATGAAAACAAAAAGCCTAGAACATTGAGCAAATTGAATGATACTAGTGCATGGGAGAAAAGAAAGATTAAAGGGAAGGTTGCCATCCAGAAGATGGTTGTTGACTTGATGGAACTCTATCTGCATAGGCTTAAACAAAGAAGGCCTCCCTATCCCAGAAGTCCTGTCGTGGCTGAATTCGCAGCAAAATTTGCTTATGAACCTACGCCGGATCAGAAACAGGCTTTTATTGATGTTGAAAATGATTTGACGGAGCGAGAGACTCCAATGGACAGATTAATATGTGGAGATGTTGGTTTTGGTAAAACCGAGGTCGCGCTGCGTGCTATCCACTGTGTTATCGCAGCTAAAAAACAAGCGATGGTTCTTGCACCGACAATAGTTCTAGCAAAGCAACATTTTAATACTATTTCAGAGCGATTTTCTGTATATCCTGATATCAAAGTTGGACTACTAAGCAGGTTTCAGACCAGATCAGAGAAGGAAACATACTTGAAAATGATTAACAATGGCGACCTGGATATTATTGTTGGAACTCACTCACTCCTTGGAAACCGTGTTGTTTATAGCAATCTTGGACTGCTTGTGGTTGATGAAGAACAGAGGTTTGGTGTCAAGCAGAAGGAGAGGATTGCTTCGTTTAAAACTTCTGTCGATGTACTTACTTTATCTGCAACTCCTATTCCACGGACTCTTTATTTAGCTCTGACAGGATTTCGTGATGCTAGTTTAATTTCGACTCCACCTCCAGAAAGAGTACCTATAAAGACTCAACTTTCTGCATTTAGTAAGAAGAGAGCAATATCAGCCATCGAGTATGAGCTAAACCGTGGTGGTCAAGTTTTTTATGTTTTGCCACGTATTAAAGGACTTGAAGAAGCAATGGAGTTTCTTGAAGAGGCATTCCCCGATGTGGAAATAGCCGTTGCCCATGGGAAGCAATTCTCGAAGCAATTAGAGGATACCATGGAGAAGTTTGCTCTTGGTGAAATAAAAATCCTTATCAGCACAAATATAGTTGAAAGTGGGCTTGATATTCAAAATGCAAACACCATCATCATTCAGGATGTTCAACAATTTGGTCTTGCACAGTTGTACCAGTTGCGTGGAAGGGTTGGGCGAGCAGACAAGGAAGCATATGCATACTTATTTTATCCAGATAAGAATGTGCTCTCTGATCAAGCATTGGAGAGACTTGCAGCCCTTGAAGAATGTCGAGAACTTGGTCAAGGCTTCCAACTAGCCGAGAGAGACATGGGTATAAGAGGTTTTGGTACTATTTTCGGCGAACAACAAACAGGAGACGTTGGAAATGTTGGCATCGATCTTTTCTTTGAGATGCTCTTTGAGAGTTTATCTAAGGTTGAAGATCACCGTGTTGTATCAGTTCCTTATCACTCAGTGCAGGTTGACTTAAATATCAATCCTCACCTTCCTTCTGAATACATAAATCATCTCGAGAACCCTATGGAAATAATAAACGAGGCCGAGCAAGTTGCTGAGAAAGACATCTGGAGTCTGATGCAATTTACAGAGAATCTGCGCCGCCAATATGGGAAAGAGCCTCAACCCATGGAGATTATTCTGAAGAAGCTTTATTTGAGGAGAATGGCGGCTGATATAGGGGTAATCAAAATTTACTCTTCAGGGAAGACAGTGTGTATGAAAACAAACATGAGTAAAAAGGTTTTCAAGATGATGACAGAGTCAATGACTTCGGATACATATAAAAATTCATTGGTTTTTGAAGGGGACCAAATTAAGGCTGAGCTTCTACTAGAGCTACCGAAAGAACAACTTCTTAATTGGATCTTTAATTGCATGGCTGAACTTCATGCTTCGCTAGCTTCCCTCATAAAGTACTAG 2475 0.4133 MAAFLSTPQHIPTPFITKFTSSPKPWNFLILNHPFHHNTFKALAPSQPFSPLNALHTQGLYSPPPPSKTDKTDPENDPISVLNDRIRREYSKRDVSRTIMDAKEADKYIKMVKEQQQRGLQKLKGDREAKDGTISYKVDPYTLRSGDYVVHKKVGIGRFVGIKLDVSKNSVEHTEYVFIEYADGMAKLPVKQASKMLYRYSLPNENKKPRTLSKLNDTSAWEKRKIKGKVAIQKMVVDLMELYLHRLKQRRPPYPRSPVVAEFAAKFAYEPTPDQKQAFIDVENDLTERETPMDRLICGDVGFGKTEVALRAIHCVIAAKKQAMVLAPTIVLAKQHFNTISERFSVYPDIKVGLLSRFQTRSEKETYLKMINNGDLDIIVGTHSLLGNRVVYSNLGLLVVDEEQRFGVKQKERIASFKTSVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERVPIKTQLSAFSKKRAISAIEYELNRGGQVFYVLPRIKGLEEAMEFLEEAFPDVEIAVAHGKQFSKQLEDTMEKFALGEIKILISTNIVESGLDIQNANTIIIQDVQQFGLAQLYQLRGRVGRADKEAYAYLFYPDKNVLSDQALERLAALEECRELGQGFQLAERDMGIRGFGTIFGEQQTGDVGNVGIDLFFEMLFESLSKVEDHRVVSVPYHSVQVDLNINPHLPSEYINHLENPMEIINEAEQVAEKDIWSLMQFTENLRRQYGKEPQPMEIILKKLYLRRMAADIGVIKIYSSGKTVCMKTNMSKKVFKMMTESMTSDTYKNSLVFEGDQIKAELLLELPKEQLLNWIFNCMAELHASLASLIKY* 825
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g2137 824 Pfam Helicase conserved C-terminal domain 473 578 IPR001650 -
Psa3g2137 824 Gene3D - 146 206 - -
Psa3g2137 824 Pfam TRCF domain 675 764 IPR005118 GO:0006281
Psa3g2137 824 SMART helicmild6 495 579 IPR001650 -
Psa3g2137 824 Pfam DEAD/DEAH box helicase 293 431 IPR011545 GO:0003676|GO:0005524
Psa3g2137 824 CDD DEXHc_TRCF 257 450 - -
Psa3g2137 824 Gene3D - 670 818 IPR037235 -
Psa3g2137 824 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 466 623 IPR001650 -
Psa3g2137 824 SMART ultradead3 267 459 IPR014001 -
Psa3g2137 824 Gene3D - 207 450 IPR027417 -
Psa3g2137 824 SUPERFAMILY TRCF domain-like 667 814 IPR037235 -
Psa3g2137 824 PANTHER TRANSCRIPTION-REPAIR-COUPLING FACTOR 19 795 - -
Psa3g2137 824 SUPERFAMILY CarD-like 138 206 IPR036101 -
Psa3g2137 824 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 320 594 IPR027417 -
Psa3g2137 824 SMART CarD_TRCF_2 142 244 IPR003711 -
Psa3g2137 824 Pfam CarD-like/TRCF domain 143 243 IPR003711 -
Psa3g2137 824 Gene3D - 143 657 IPR027417 -
Psa3g2137 824 PANTHER FANCONI ANEMIA GROUP M FANCM FAMILY MEMBER 19 795 - -
Psa3g2137 824 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 286 448 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g2137 Psa-Chr3 187940294 187946539 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g2137 - - gmx:100791900 1300.42
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa3g2137 3 187940294 187946539 Psa3g2137 3 187940294 187946539 ECH