Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g2132 ATGGGCGCAACCACAGACCCAATCCTAGACCCTTCCGATGAACAACAAAAACGCTCCGAGATCTATACCTATGAAGCCCCATGGCACATCTACGCCATGAACTGGAGCTCGAAATTGTTCAACTCGACGACACAAACGGCGAATCAAATCCGATCCAAATCCTTTCTTTCGAACATCCATATCCACTACCAAAGCAACTTCATCCCTGATAAAGACTGTCACCGCCCTGACCTCTTAGCCACCTCCAGCGATTTCTCCGGCATATGGCGAATCTCCGATTCCGATGAGTCACAGTCTCGCGTTGAACTCAAAAGTCTTCTTAACGGTAACAAAAACAGTGAGTATTGTGGTCCTATTACTTCCTTTGATTGGAACGAAGCTGAACCCAGACGAATAGGAACTTCCAGTATTGACACAACTTGTACAATTTGGGATATTGAAAAGGAAACGGTTGATACGCAATTGATTGCTCATGATAAAGAGGTGTATGATATAGCTTGGGGTGGTGTTGGTGTTTTCGCCTCGGTTTCTGCTGATGGCTCCGTTAGGGTTTTTGATTTACGCGATAAGGAACATTCCACTATAATTTACGAGAGTTCTGAACCTGATACACCGTTGGTTAGGCTGGGTTGGAATAAACAGGATCCTCGCTATATGGCTACGATTATTATGGATACTGCTAAGGTTGTTGTTCTTGATATTCGTTTTCCGACCCTACCCGTTGTGGAATTGCAGAGACATCAAGCTAGTGTGAATGCTATTGCGTGGGCACCACATAGTTCTTGCCATATTTGTACTGCTGGTGATGATTCTCAGGCGTTGATTTGGGATCTTTCTTCAATGGGTCAACCTGTTGAAGGTGGGCTTGATCCTATTTTGGCTTATACTGCTGGTGCTGAAATTGAACAGCTTCAATGGTCTTCTTCACAGCCTGATTGGGTTGCTATTGCTTTCTCCACTAAGCTTCAGATTCTCAGGGTGTGA 984 0.4472 MGATTDPILDPSDEQQKRSEIYTYEAPWHIYAMNWSSKLFNSTTQTANQIRSKSFLSNIHIHYQSNFIPDKDCHRPDLLATSSDFSGIWRISDSDESQSRVELKSLLNGNKNSEYCGPITSFDWNEAEPRRIGTSSIDTTCTIWDIEKETVDTQLIAHDKEVYDIAWGGVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDTAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILRV* 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g2132 327 ProSitePatterns Trp-Asp (WD) repeats signature. 264 278 IPR019775 -
Psa3g2132 327 SMART WD40_4 148 186 IPR001680 GO:0005515
Psa3g2132 327 SMART WD40_4 100 145 IPR001680 GO:0005515
Psa3g2132 327 SMART WD40_4 237 277 IPR001680 GO:0005515
Psa3g2132 327 PANTHER WD REPEAT CONTAINING PROTEIN 13 327 IPR045159 -
Psa3g2132 327 Gene3D - 12 326 IPR015943 GO:0005515
Psa3g2132 327 ProSiteProfiles Trp-Asp (WD) repeats profile. 244 280 IPR001680 GO:0005515
Psa3g2132 327 SUPERFAMILY WD40 repeat-like 72 285 IPR036322 GO:0005515
Psa3g2132 327 Pfam WD domain, G-beta repeat 155 186 IPR001680 GO:0005515
Psa3g2132 327 Pfam WD domain, G-beta repeat 244 277 IPR001680 GO:0005515
Psa3g2132 327 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 244 280 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g2132 Psa-Chr3 187791306 187792354 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g2132 K11805 - gmx:100779365 561.607
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa3g2132 3 187791306 187792354 Psa3g2132 3 187791306 187792354 ECH