Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g2131 ATGAAGGTATCATGTTACACTCCACATGTTAAGATACCTCAAGAACCAACCTTTTCTTCAGATAAAGCTCGTTTCTTTCTTCAAAACTGCAACAATTTCAAGCAACTGAAACAAATCCATGCCAGAATCATCCGTTTTCGTCTCACCCATGACCAATTACTCATCAGAAAGCTTTGTCAAATCTCTTCTTCGTATGGTAAACTAAATTACTCTAGTTTGGTTTTTGATCAACTTGATTCTCCTGATACTTTTACCTGGAATGTTATGATTAGAGCTTGTAATACTAGTGGTTCACCTGAGAAAGCGATTGTTTTGTTTAAGGAGATGATGTGTCATGGATTGGTGACTGATAAGTTTACGTATCCGTTTGTTGTGAATGCTTGTATTGCTTCTGATGATGTTGATTTTGGTAGAGTAGTGCATGGGGTTTCGATTAAAATGGGGTTTTGGAGTGATGTTTATGTGCAGAATAATATGATGAATCTTTATTTCAAGTGTGGGAGGGATGTTGTTGATGATGGGTGGAAGGTGTTTGATAAGATGCGTGTGCGGAATGTGGTTTCTTGGACTACTGTGATTGCTGGGCTGGTTGGTTGTGGGAGATTGGATACTGCGAGGGAGGTTTTTGAGAAGATGGGTTCTAAGAATGTTGTTTCGTGGACAGCGATGATTGATGGGTATGTGAAATATGGTAACCCGATTATGGCTTTTGATTTGTTTGAAAGGATGCTGCTTGATGATGTGAGGCCTAATGAGTTCACTTTGGTGAGCTTGATTAAAGCTTGTACAGATTTGGGTAGTCTTAAATTGGGTCGACGGATGCATGATTTTGCTCTGAAGAATGGTTTTGAGGTTGGACCTTTCTTGGGTACTGCTCTTATTGATATGTATAGTAAATGCGGTAGTTTAGATAATGCGGTTAAAGTGTTTGGTTTAATGAAAGTGAGAAACTTGGCTACTTGGAATACAATGCTTACTAGCTTCGGTGTGCACGGATTTAGGGATGAAGTGTTACATCTTTTTGAAGAAATGGAGAGGGTTAATGTAGTTCCTGACGCTATCACTTTTGTAGGTGTTTTGAGTGCTTGTGTTCAGATGAATGATTTGGAAGAAGGCCGTAAGTATTTCAGTCTCATGACAGAACATTATGGTATAACGCCTATCTTTGAACACTATACATGCATGGTTGAACTCTATGTTCGTGCCAACGAGTTGGATGAGATTTGCACATTAGAGAACACAATGTCATTGTCAATGAAAGCAAGTCATAATGTTGCAGAGTTGCTTCAAGAGAGCAAACTCACTAGAATTGATGACATAGAGAAACTTATACACAAGTATTACAGGAATTCCGATTTATCAGAATTAGTTTTAGATCATTCTGCAACTCCCACCCAGCCAAATTTCAACCGTCCATATTTGACTTTATTAGCTTGA 1437 0.3855 MKVSCYTPHVKIPQEPTFSSDKARFFLQNCNNFKQLKQIHARIIRFRLTHDQLLIRKLCQISSSYGKLNYSSLVFDQLDSPDTFTWNVMIRACNTSGSPEKAIVLFKEMMCHGLVTDKFTYPFVVNACIASDDVDFGRVVHGVSIKMGFWSDVYVQNNMMNLYFKCGRDVVDDGWKVFDKMRVRNVVSWTTVIAGLVGCGRLDTAREVFEKMGSKNVVSWTAMIDGYVKYGNPIMAFDLFERMLLDDVRPNEFTLVSLIKACTDLGSLKLGRRMHDFALKNGFEVGPFLGTALIDMYSKCGSLDNAVKVFGLMKVRNLATWNTMLTSFGVHGFRDEVLHLFEEMERVNVVPDAITFVGVLSACVQMNDLEEGRKYFSLMTEHYGITPIFEHYTCMVELYVRANELDEICTLENTMSLSMKASHNVAELLQESKLTRIDDIEKLIHKYYRNSDLSELVLDHSATPTQPNFNRPYLTLLA* 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g2131 478 Pfam PPR repeat family 317 364 IPR002885 -
Psa3g2131 478 Pfam PPR repeat family 81 128 IPR002885 -
Psa3g2131 478 Pfam PPR repeat family 215 262 IPR002885 -
Psa3g2131 478 Gene3D Tetratricopeptide repeat domain 169 270 IPR011990 GO:0005515
Psa3g2131 478 Gene3D Tetratricopeptide repeat domain 25 168 IPR011990 GO:0005515
Psa3g2131 478 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 216 250 IPR002885 -
Psa3g2131 478 Gene3D Tetratricopeptide repeat domain 291 459 IPR011990 GO:0005515
Psa3g2131 478 TIGRFAM PPR: pentatricopeptide repeat domain 320 353 IPR002885 -
Psa3g2131 478 TIGRFAM PPR: pentatricopeptide repeat domain 291 317 IPR002885 -
Psa3g2131 478 TIGRFAM PPR: pentatricopeptide repeat domain 84 116 IPR002885 -
Psa3g2131 478 TIGRFAM PPR: pentatricopeptide repeat domain 218 252 IPR002885 -
Psa3g2131 478 TIGRFAM PPR: pentatricopeptide repeat domain 187 217 IPR002885 -
Psa3g2131 478 PANTHER BNAA06G32750D PROTEIN 13 426 - -
Psa3g2131 478 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 185 215 IPR002885 -
Psa3g2131 478 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 317 351 IPR002885 -
Psa3g2131 478 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 13 426 - -
Psa3g2131 478 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 82 116 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g2131 Psa-Chr3 187784848 187787134 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g2131 32 415 Glycoside Hydrolase AT3G49170 30.513 4.56e-52 187
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g2131 - - gmx:100789790 651.744