Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g2116 ATGATCAGAGTCAGATCTAACCTATCTGTTTTCTCTGTTGTGCTGTTACGCGTAAGGCAAAACCCAGTCACTGTTAATCACTGTGATATGGTTCAAAAGCCTCTTGTGAATGGTTCTTTCAATGATTTTGACTATCTAACCAATGACACTTTTTTAGCTACACCAAAATTTGGTTTCTTAGTTAGGTTCTTTTCTACTGAATCCTCAACCAAAAGCCTTGGAATGTCCACTAATGCTCCTGCATTGGGATTGGATGAGACCTTGAGTGATGAAGACGATGATGATAATGACGACGACAAGGATGATTGTGATAAGAATAGTTCTCAGTTACATTTAATGGATGATGATTTTGTCCAAGATGTTAAGACCATTATGGATATAATTGACGAACCGGGTTCTGGACCACATGAAATTAAGCAGAAGCTTGAGCATTGCAGTGTTAAGGCATCATCAGAGTTGGTTGTGGAGGTTCTTTCCAGAATTCGCAATGATTGGGAAGCCGCTTTCACTTTTTTCTTGTGGGCAGGGAAGCAACCAGAGTATACTCATTCGGTTCGCGAATACCATTCAATGATATCTATCCTGGGTAAAATGAGGAGGTTTGATACTGCTTGGGCATTAATCGAAGAAATGAGAGGAAAGAGAACTGGTCAATCTCTTGTTACTCCACAGACTCTCTTGATTATGATAAGGAAATACTGTGCTGTTCATGATGTTGGTAGGGCTATAAACACTTTCTATGCTTTTAAACGGTTTAACATTCAAGTTGGATTGTATGAATTTCAAGGCCTTCTTTCTGCGCTTTGCCGATACAAGAATGTGCAAGACGCTGAACACTTATTGTTCTGCAACAAAAATGTTTTCCCACCTGACACCAAAAGCTTTAACATCATTCTTAATGGATGGTGCAATTTGATCGTCAGCGCGCGCAATGCAGAAAGGATTTGGGAGGAAATGAGTAAGAGAGGAGTTAAACATGACGTTGTCTCCTATGCGAGTATCATATCTTGCTATTCAAAATCTTCTAAACTTTATAGGGTGCTCCAGCTGTTTGAACAAATGAAGAAAAGGAATATCACTCCTGATAGAAAGGTTTATAACGCGGTCATTTTTTCTCTTGCGAAGAATAGGCTTGTGAAAGAAGCTATAAATCTTATTGGAACAATGGAAGACAGCAATGTCACTCCAGATGCCATTACTTACAACTCCCTGATCAAGCCACTCTGCAAAAACCGCAAAATGGATGAAGCAAAAGAAATTTTCGATGAGATGTTGAAGCGACGCATATCCCCGTCTATTCGGACTTTTCATGCTTTCTTCCGAATATTAAGAGTCAAAGAAGAAGTATTTGAGCTTTTGGACAAAATGAAAGAGCATGGGTGCAACCGAACTATTGAGACTTATATAATGTTGATAAGGAAGTTTTGCCGGTGGCGCCAACTTGATGAAGTCAATAAGATATGGAATGCAATGAGGGAAGATGGAATCGGCCATGATCGTAGCTCGTATATTGTACTGATTCATGGCCTGTTTCTGAATTGTAAGGTAGAGGAAGCATACAAATACTATATAGAAATGCAAGAGAAAGGTTTCCTTCCTGAACCAAAGACAGAAAATATGCTTCAGGCATGGCTTTCTGGGAAACAAGTAACAGAGGGCCAGGTTACAGATTTAGAACACAATCAATTGGAATGTGGTAATCTTAAAAATAATGTAAAACCTATACCAAGTAAATTTGATAAAGAAAAAGCTTTTCTTCGGGAACCTGAGACCAGAAGCGTAACAAGAGAAGGAGGTTTTTCTTTCTGGGAGAAGTAA 1818 0.3905 MIRVRSNLSVFSVVLLRVRQNPVTVNHCDMVQKPLVNGSFNDFDYLTNDTFLATPKFGFLVRFFSTESSTKSLGMSTNAPALGLDETLSDEDDDDNDDDKDDCDKNSSQLHLMDDDFVQDVKTIMDIIDEPGSGPHEIKQKLEHCSVKASSELVVEVLSRIRNDWEAAFTFFLWAGKQPEYTHSVREYHSMISILGKMRRFDTAWALIEEMRGKRTGQSLVTPQTLLIMIRKYCAVHDVGRAINTFYAFKRFNIQVGLYEFQGLLSALCRYKNVQDAEHLLFCNKNVFPPDTKSFNIILNGWCNLIVSARNAERIWEEMSKRGVKHDVVSYASIISCYSKSSKLYRVLQLFEQMKKRNITPDRKVYNAVIFSLAKNRLVKEAINLIGTMEDSNVTPDAITYNSLIKPLCKNRKMDEAKEIFDEMLKRRISPSIRTFHAFFRILRVKEEVFELLDKMKEHGCNRTIETYIMLIRKFCRWRQLDEVNKIWNAMREDGIGHDRSSYIVLIHGLFLNCKVEEAYKYYIEMQEKGFLPEPKTENMLQAWLSGKQVTEGQVTDLEHNQLECGNLKNNVKPIPSKFDKEKAFLREPETRSVTREGGFSFWEK* 606
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g2116 605 Pfam PPR repeat 502 531 IPR002885 -
Psa3g2116 605 Pfam PPR repeat 188 214 IPR002885 -
Psa3g2116 605 Pfam PPR repeat 467 496 IPR002885 -
Psa3g2116 605 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 76 595 - -
Psa3g2116 605 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 291 326 IPR002885 -
Psa3g2116 605 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 499 533 IPR002885 -
Psa3g2116 605 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 327 361 IPR002885 -
Psa3g2116 605 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 464 498 IPR002885 -
Psa3g2116 605 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 397 431 IPR002885 -
Psa3g2116 605 TIGRFAM PPR: pentatricopeptide repeat domain 399 432 IPR002885 -
Psa3g2116 605 TIGRFAM PPR: pentatricopeptide repeat domain 467 496 IPR002885 -
Psa3g2116 605 TIGRFAM PPR: pentatricopeptide repeat domain 365 398 IPR002885 -
Psa3g2116 605 TIGRFAM PPR: pentatricopeptide repeat domain 329 362 IPR002885 -
Psa3g2116 605 TIGRFAM PPR: pentatricopeptide repeat domain 502 533 IPR002885 -
Psa3g2116 605 TIGRFAM PPR: pentatricopeptide repeat domain 188 213 IPR002885 -
Psa3g2116 605 Pfam Pentatricopeptide repeat domain 314 370 IPR002885 -
Psa3g2116 605 Gene3D Tetratricopeptide repeat domain 135 280 IPR011990 GO:0005515
Psa3g2116 605 PANTHER OS01G0816000 PROTEIN 76 595 - -
Psa3g2116 605 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 362 396 IPR002885 -
Psa3g2116 605 Pfam PPR repeat family 396 440 IPR002885 -
Psa3g2116 605 Gene3D Tetratricopeptide repeat domain 284 446 IPR011990 GO:0005515
Psa3g2116 605 Gene3D Tetratricopeptide repeat domain 447 581 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g2116 Psa-Chr3 186720068 186722684 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g2116 188 554 Glycosyltransferase AT1G05670 27.177 1.08e-36 144
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g2116 - - gmx:100785546 884.789