LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Psa3g2087	ATGGGTGCAAGTCGAAAGCTTCAAGGAGAGATAGATCGTGTTCTCAAGAAGGTTCAGGAAGGCGTTGAAGTATTTGACAGCATCTGGAACAAGGTTTACGACACAGACAATGCAAATCAAAAGGAGAAATTCGAGGCAGACCTCAAAAAGGAGATTAAGAAGCTCCAGAGGTATAGAGATCAAATTAAGACTTGGATTCAATCCAGTGAGATCAAGGATAAGAAGGTTAGTGCCGCGTACGAGCAAGCTCTGGTAGATGCTCGGAAGTTAATTGAACGAGAAATGGAAAGATTTAAAATATGTGAGAAGGAAACTAAGACCAAAGCATTCTCCAAAGAAGGCTTGGGTCAACAGCCGAAGACAGATCCGAGAGAGAAGGCTAAATCAGAGACGAGGGATTGGTTAAACAATGTGGTCGGAGAGTTAGAATCTCAGATCGATAACTTTGAAGCTGAGCTTGAAGGCCTTACAGTCAAGAAAGGAAAAAACAGGCCTCCTAGATTGACGCATCTAGAGACATCAATTACTCGGCACAAGGCTCATATAAAGAAATGTGAATTAGTTTTGAGGCTTCTAGATAATGACGAATTGAGTCCAGAGCAGGTTAATGATGTGAAAGATTTCTTGGACGACTATGTAGAGCGTAATCAGGAGGATTTTGACGAATTTGATGATGTTGATGAACTATACATTTCATTACCTTTAGATAAGGTTGATACTCTAGAAGATCTTGTTACAATTCCCACAAGTGTTGCAGTTGCAAAGACAATCAGTTCATTGCCTTTAGACGAAGGGAAGATTCTAGAAGATCTTGTTACAATTCCCACTGGTCTTGCAAAGGTGGCACCTGGTATTAGCTTGAAGAGTCCTTTGGCAGTATCGGCATCACAGTCAGCATCATCGCAAACATCTGAGCAAGCTGACGAGACAGCGTCTCAAGATAGCAATTCTGACATTGTGGCAAAAACTCCACCTCCTAAAAGTGGCGGAATCAGCTCTTCTGCTTCAACACCTACCGGGAACAATGCCACTCCTGCTTTTGTGAATGTTTCAGGTCATAACTTGTCCAGTTCTCCGGCTGCGGTCCTTCCTGTCTCAAATTCTGTTCGAAATGTCTTGGAGAATGCTAATGTAAATCAGTCGGCCTCTACAAAGGAAGAAGATATTAACAGCTTCCCTAGCCGTAGGCCATCTCCTTCGCTTTCTGATGCAGCTCTTGTGAGGGGCAGAAACAGCTTGTCGAATCAAGCAACAGCCAGCATCCCTCTTGGTTCCGGAAACATGGTTTCTGGTAATGGAGCCTTTGGTTCACTCCCTTCAGCCTCAGAAATAACTAAGCGAAACATATTGGCAGCTGATGATAGACTTGGAAGTAGTGGAATGGTGCAACCTCTTGTATCACCACTAAGTAATAGATTGATCTTGCCTCAGGTTGGGAAGGTTAATGATGGAACTGCCTCTGTTGACTCTAGTACTGTTAATGAAGCTGCAGCAGTATCTGGGAGAGTTTTCTCCCCTTCTGTGGTTCCTGGCATGCAATGGAGGCCTGGAAGTCCCTTTCCGAATCAGAATGATGCGGGGCAGCTTCGTGGAAGAACTGAAATAGCTCCTGATCAAAGGGAAAAGTTTCTGCAGAAGTTTCAGCAAGTGCAACAACAAGGGCCCAGTACCCTTCTTAATATGCCTTCCCTTGTTGCAGGAAATCATAAGCAGTTTTCTTCCCAACAACAAAGTCCACTTTTGCAGCAGTTCAACTCTCAAGGCTCATCCGTTTCTTCACAATCTAGTATGGGACTTGGAGCCCAATCCCCGAGTCTTGGTGGTATTTCTTCTGTCTCGCTACAGCAGCCCAACTCCGTACATCCGCCGTCTAGTCAACAAGCAATTCCAGGTGCTGCTAAAGATGCAGATAAAATTGAAGAACAGCAACAACATCAGAGTTTTCCTGACGAGTCCACAACTGAACCCACTAGCACAGGGATTGGCAAGAATCTCATAGTTGAAGATGATTTGAAATCAGCATATGTTGCAGATTCACCTGTAGGTGCATCTGCCTCTCTTCCAGAAGCTGCTCAGATTTCCAGAGATATTGATTTGTCTCCTGGTCAACCTTTACAATCAAATCAATCTGCTGGCCACCTTGGAGTCATTGGAAGAAGAAATGGTGTTGACCTTGGAGCCATTGGTGATAGCTTTAGTGCATCAAGTGTTAATTCTGGTGGAGTGCGTGATCAACTATATAATTTACAAATGCTTGAGGCAGCACATTTTAAAGTTCCACTTGCTAAAGACTCAGAGCGTCCTAGAACTTATACACCTAGGCATCCAGCAATTACACCTCCTAGCTATCCACAAGTACAAGCGCCTATAGTTAACAACCCTGCCTTTTGGGAGAGATTAGGTCTTGAGGCATATGGCACTGACACCCTGTTCTTTGCATTTTATTATCAACAGAACACATACCAACAATATTTGGCTGCAAAGGAGCTAAAGAAGCAGTCTTGGAGATACCACCGAAAGTATAATACATGGTTTCAGCGTCATGAAGAGCCCAAAGTTGCTACGGATGATTTTGAGCAGGGAACATATGTGTATTTTGATTTTCATATTGCAAATGATGACCTGCAACATGGATGGTGTCAAAGAATCAAGACTGAATTCACTTTTGAGTATAATTATCTTGAAGACGAGCTTCTTGTATAG	2703	0.4332	MGASRKLQGEIDRVLKKVQEGVEVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRDQIKTWIQSSEIKDKKVSAAYEQALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPKTDPREKAKSETRDWLNNVVGELESQIDNFEAELEGLTVKKGKNRPPRLTHLETSITRHKAHIKKCELVLRLLDNDELSPEQVNDVKDFLDDYVERNQEDFDEFDDVDELYISLPLDKVDTLEDLVTIPTSVAVAKTISSLPLDEGKILEDLVTIPTGLAKVAPGISLKSPLAVSASQSASSQTSEQADETASQDSNSDIVAKTPPPKSGGISSSASTPTGNNATPAFVNVSGHNLSSSPAAVLPVSNSVRNVLENANVNQSASTKEEDINSFPSRRPSPSLSDAALVRGRNSLSNQATASIPLGSGNMVSGNGAFGSLPSASEITKRNILAADDRLGSSGMVQPLVSPLSNRLILPQVGKVNDGTASVDSSTVNEAAAVSGRVFSPSVVPGMQWRPGSPFPNQNDAGQLRGRTEIAPDQREKFLQKFQQVQQQGPSTLLNMPSLVAGNHKQFSSQQQSPLLQQFNSQGSSVSSQSSMGLGAQSPSLGGISSVSLQQPNSVHPPSSQQAIPGAAKDADKIEEQQQHQSFPDESTTEPTSTGIGKNLIVEDDLKSAYVADSPVGASASLPEAAQISRDIDLSPGQPLQSNQSAGHLGVIGRRNGVDLGAIGDSFSASSVNSGGVRDQLYNLQMLEAAHFKVPLAKDSERPRTYTPRHPAITPPSYPQVQAPIVNNPAFWERLGLEAYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKVATDDFEQGTYVYFDFHIANDDLQHGWCQRIKTEFTFEYNYLEDELLV*	901

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Psa3g2087	900	Coils	Coil	41	61	-	-
	Psa3g2087	900	PANTHER	CCR4 NOT-RELATED	1	246	IPR040168	GO:0030015
	Psa3g2087	900	PANTHER	CCR4 NOT-RELATED	254	900	IPR040168	GO:0030015
	Psa3g2087	900	MobiDBLite	consensus disorder prediction	376	398	-	-
	Psa3g2087	900	MobiDBLite	consensus disorder prediction	569	603	-	-
	Psa3g2087	900	Pfam	NOT2 / NOT3 / NOT5 family	756	894	IPR007282	GO:0006355
	Psa3g2087	900	MobiDBLite	consensus disorder prediction	646	661	-	-
	Psa3g2087	900	MobiDBLite	consensus disorder prediction	376	401	-	-
	Psa3g2087	900	PANTHER	BNAA10G16600D PROTEIN	1	246	-	-
	Psa3g2087	900	PANTHER	BNAA10G16600D PROTEIN	254	900	-	-
	Psa3g2087	900	MobiDBLite	consensus disorder prediction	615	662	-	-
	Psa3g2087	900	MobiDBLite	consensus disorder prediction	297	339	-	-
	Psa3g2087	900	Pfam	Not1 N-terminal domain, CCR4-Not complex component	4	235	IPR007207	GO:0005634\|GO:0006355
	Psa3g2087	900	MobiDBLite	consensus disorder prediction	110	131	-	-
	Psa3g2087	900	Coils	Coil	132	159	-	-
	Psa3g2087	900	PIRSF	NOT_su_3_5	1	900	IPR012270	GO:0006355\|GO:0030015
	Psa3g2087	900	Gene3D	-	740	895	IPR038635	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Psa3g2087	Psa-Chr3	183805500	183817097	Dispersed

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Psa3g2087	K12580		-	gmx:100783415	1406.35

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Psa3g2087	3	183805500	183817097	Psa3g2087	3	183805500	183817097	ECH